Trichinella spiralis: Tsp_00538
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Entry
Tsp_00538 CDS
T01609
Name
(RefSeq) ATP-dependent RNA helicase DDX19B
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03013
Nucleocytoplasmic transport
tsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
Tsp_00538
03015 mRNA surveillance pathway
Tsp_00538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_00538
Enzymes [BR:
tsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tsp_00538
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
Tsp_00538
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
10901785
NCBI-ProteinID:
XP_003376303
LinkDB
All DBs
Position
Unknown
AA seq
461 aa
AA seq
DB search
MRLVTDVNCCVYKVHLLLVVMSRNAEGEIVYSKKEIALLRKLINDTLVDDSNSVFKIESR
YGLVYKAAAHFEHLPLSYDILKQLCTHGYFKPSKIQATSMQFMLADSPVDVAIQSQSGTG
KTVAFVLCVLQRLQLDNRWPQCLCLVPTYELAVQVRDVFCKLGSYSNSLSIALAARSTDA
TVPPHDQQITDQVIVGTSGTVIRWMHQLKCFDPKKLNTFILDEADLMLNLGSQIIHIIQT
LRADCQRLLFSTTYNNAVRKLFLNVAKDPVTITVQNEGLVLDNIEQFYIKCKTNDEKLEA
ICNFYRTLVIGQCVIFCETRSTAHWLAVKIRAKGHHVAVLSGDMVLEQRAHAIKRFRKGE
DRILIATNLCSKGIDIIQVNIVINFDLPRATALEVDIGEYIHRIGHCGRFGRRGLAFTFI
TDNEGLCGVQMIEYYLSKPVKMLDPFDQKNLTDLKSSLSVT
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgcggttagtcaccgatgttaattgttgtgtttacaaggttcatttgttgcttgtagtg
atgtctcgaaatgcagaaggcgagatagtttacagcaaaaaggagatagcacttttgaga
aaattgatcaacgacacattggtggacgattcgaattccgtgttcaagatcgaaagtcgt
tacggtctggtttataaagcggcagctcattttgagcatctgccattaagctatgatata
ttgaaacagttatgcactcacggctatttcaaaccgtcgaaaatccaagcgacaagcatg
cagttcatgcttgccgattcgccggtagatgtggctatacaaagtcaatccggcaccgga
aaaacggtggcttttgtgctgtgcgttctgcaacgcttgcaattggacaaccgttggccc
cagtgtttgtgcttggttccaacttatgaattggcggttcaggttcgcgatgttttttgt
aagttgggttcatattccaactcattgtccattgcattggctgcacgttctacggatgcg
acggtcccacctcacgatcaacagatcactgatcaagtgattgttggaacttcaggcacg
gtgatacgttggatgcatcagttgaaatgcttcgatccgaaaaaattaaacactttcatt
cttgacgaagctgatttgatgcttaatttggggtcgcagattattcacatcattcaaact
ttgcgagcagattgtcaacgtctacttttctcaacgacgtataataatgcagtgagaaaa
ctgttccttaacgttgcgaaagatcctgtcactattactgtgcaaaatgaagggcttgtt
ttggataatatcgaacaattttacatcaaatgtaaaacgaatgatgaaaagctcgaagcg
atctgcaatttctacagaacattggttattggacagtgtgtgatattttgtgagacacga
agtactgcacactggctggctgttaagatccgtgccaagggccaccatgtagctgtatta
tcaggggacatggtcctagaacagagagcacatgcaattaaaagatttcgcaaaggcgag
gaccgtattttaatcgctacaaacctctgctctaagggaattgatattatccaagtaaac
atagttattaatttcgatcttcctcgcgctacggctttggaagttgatattggtgagtat
attcatcgtattggacattgcggtcgatttggtcgtcgtggtcttgctttcacctttatc
acagacaatgaaggactttgtggcgttcagatgattgaatattatttgtccaaaccagtg
aagatgttggatccgttcgatcagaaaaatttaactgatttaaagtcaagtttgtctgtt
acataa
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