Trichinella spiralis: Tsp_00590
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Entry
Tsp_00590 CDS
T01609
Name
(RefSeq) putative BRCA2 repeat-containing domain protein
KO
K08775
breast cancer 2 susceptibility protein
Organism
tsp
Trichinella spiralis
Pathway
tsp03440
Homologous recombination
tsp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Tsp_00590
03460 Fanconi anemia pathway
Tsp_00590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tsp04121
]
Tsp_00590
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_00590
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_00590
Ubiquitin system [BR:
tsp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
Tsp_00590
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
Tsp_00590
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
Tsp_00590
FA (Fanconi anemia) pathway
Downstream FA components
Tsp_00590
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA-2_OB3
BRCA-2_helical
BRCA2
BRCA2DBD_OB2
Tower
Motif
Other DBs
NCBI-GeneID:
10901859
NCBI-ProteinID:
XP_003376376
LinkDB
All DBs
Position
Unknown
AA seq
1221 aa
AA seq
DB search
METDEKVQNSPERIIQNAKIGDVLDDSFDENDPFIFEMIEAASTVATSSGNTECGATGKV
ALDSSFIGASQIKRKLPSCGSVEFHSESSENKKIRNISPVEELFSDSKNSEDLSFSRCIT
MDNYQIVANVHNEEKSLACKTLSGFKSASGKDCFVSLKALEKAEHFFDAQDSRFIGVGEV
PSGCNKTSDFPSTEEGCTVPEVVNLSVTSAETENEICGFSTAAGKRCTVNSASLAKAKEL
FNSALAEISLGSSVASAALKDPVENDDDQLNTVKSISSISEIVEENIETEHSLPGFVGFS
TASGKKCSYSSEALEKARKLLSSVDPDESIPFSESVSQSCVESTSSTDKMLLSSSPSVDT
NMMKISGMAVPKSESSFAKSVTGEKKYIPIRSASSMTKFKPHWNNEKKIKLFDVCQTPSP
SGLSSRWRAGRSSTVMRDTPCTRPYVQIFPRGKLNRRFLYRTVQSELENLEVKHIDAADE
SDSASSKSSSTKLNQMTIQPSRTTYAGGGKLFKLWKSKSKIPDYSKFRPKLKPQSCLSED
ELLAMGVRESTLRVTRKTASEFYFTADYVNSEPNSEIIVADDVIVKVDHQGGISMDEIIN
ADWYVFRGFCGSSDVDNKLLNDDWIRNHLQWIVLKLASLEVQFPTCLAARCLNVDNVLLQ
LRYRYDRELEHAQRPLLRKILNRDYPATAPMILRVVEFENMDEECITVELTDGWYGINAK
LDACLSDLAKSGRIQVGMKLFIINATLHGAEGGCEPLEAPCNVRLALTINGVRRARWWAR
LGYLRITKTPAFPISSLREGKVVAVKVILCRKYPPVYLEKYADGRSVMRNERCEEQISLR
FAEEVDHLMEKMLERVVNDACEFDVDSKGGGIVEESAIHLCSSIDSARLGSFLSATSSLE
EIYNEDDAEQLLHLYNKCPDPERFQLNSILKYKNRLDEKRAEKLREMLERDMANLKARQQ
LRTVVPILKLRISDFDALKRGKSYILNIWRPDVDELDARLREGDAYSLYQLHATLSRSAS
GEIELNSEKSTRIVELNIRLACEQTLIGEKFQHRSVTLLGDLQRSDFQAAYDEVDIVGFV
IDIASATDVDTVYLGDQEMNIVALKIPGGLQNFGWEKVLSVGNFIACQNLHYKRLSKARI
PQLCATIVTVIKENPKQSNLSCSLTSLKAEVSKRPEFLNEARSAFKALLRGSSTRTSLNT
SASSLHLHSSPSVNQQFKSPK
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atggaaactgatgaaaaagtgcaaaactcacctgaacgtattatccaaaatgcaaagatc
ggtgatgtactagatgattcgtttgacgaaaatgatcctttcatttttgaaatgatcgaa
gcagcttcgaccgttgccacgtcatcagggaatactgaatgtggtgctacaggcaaagtg
gctctcgattcttcttttattggtgcatcgcaaatcaaaagaaaattgccaagttgcgga
agtgtggagtttcattctgaatcttcggaaaacaaaaaaatccgaaatatctctcctgtg
gaggaattgttttccgattccaaaaattcagaagacctctcattttcgcgctgcattacg
atggacaattatcagattgttgcgaatgttcataatgaagaaaaatcattagcatgtaaa
acgttgtcaggtttcaagtctgcttcgggaaaagattgttttgtcagtttgaaagctttg
gaaaaggctgaacattttttcgacgcccaagacagtcgtttcatcggggtgggagaagtg
ccgtctggctgcaacaaaacttcagactttccttcaacagaagaaggttgtacagtgcct
gaagttgtgaatttgagtgttacatcagcagaaacagaaaacgagatttgcggatttagc
acagctgctggaaagcgttgtacagtgaattcagcttcactagccaaagcgaaggaactt
ttcaatagcgctttagctgaaatttccttgggttcaagtgttgcttcagcagctttgaaa
gatcctgttgaaaacgatgatgaccagctgaatacagtgaaatccatttcgagtatatct
gagattgttgaggaaaacattgaaacggaacacagcctcccaggatttgtcggtttctct
acggcgagtgggaaaaaatgctcctattcttctgaagctttggaaaaagcgaggaaactg
ctcagcagtgttgacccggacgaatccattccattttcagaaagcgtcagtcagtcatgc
gtggaatctacaagttccaccgacaagatgcttctaagtagttcgccttctgttgataca
aacatgatgaaaattagtggaatggctgttccaaaatccgaatcatcttttgccaaatct
gttacaggagagaaaaaatatatcccaattcgatctgcatcttcaatgaccaaattcaag
cctcactggaataatgaaaagaagataaaattgttcgacgtatgccaaaccccatcgccc
agcggtctgtcgtccagatggcgtgctgggcgatcatctacggtgatgcgcgacacaccg
tgcaccagaccgtatgttcaaatttttccacgcggaaaattgaaccggcgatttttatac
agaactgttcagtcagagttggaaaatttggaagtcaagcacattgacgcggctgatgaa
tctgattcagcttcttcgaaaagcagctcgacaaagttgaatcaaatgaccatacagccg
tcacgaacaacttacgcaggcggtgggaagctgttcaaattgtggaaatcgaaatcgaaa
ataccagattattcaaaatttcgtccaaagctaaaaccacagtcgtgtttaagcgaagac
gagctgttggctatgggtgtgcgagaatcgacgttacgggtgaccagaaaaacagcaagt
gaattctattttactgcagattatgtaaattctgagccaaacagtgaaattattgtcgct
gacgatgtaattgtcaaggtggaccatcagggaggaatatctatggacgaaatcattaat
gctgattggtatgttttcaggggtttttgtggttcatctgatgttgacaacaagctgcta
aatgacgactggattcgcaatcatttgcagtggattgttcttaaattggcttcgttggag
gtgcaatttccgacatgtttagctgcaaggtgcttgaacgtggacaacgtgttgcttcaa
ctacgctacagatatgacagggagttggaacatgcgcagcgaccacttttgagaaagatt
ctgaaccgtgattacccggcaacggcgcctatgattcttcgagttgtggaatttgaaaat
atggacgaagaatgcattacagtcgaactgacggacggttggtatggaatcaacgccaag
ttggacgcttgtctttctgacttggccaagagtggtcgtatacaagtgggaatgaagctg
tttatcataaatgcaacgttgcacggtgctgaaggtggttgtgaaccgcttgaagcaccc
tgtaacgttcgattggcgttgacgataaatggtgtacgtagagctcgttggtgggcccgt
ctcggctatttgcgaattacaaaaaccccagcatttccgatatccagccttcgcgaaggt
aaagtagtcgcggtgaaagtgattctttgcagaaaatatccaccagtttacttggaaaaa
tatgctgacggtcgttcagtgatgcgcaatgagcgttgtgaagagcaaatatcgttgcgt
tttgctgaagaggtggatcatttgatggagaagatgttggaacgagtggtgaatgatgcc
tgtgaatttgacgtagacagcaaaggaggaggtatagtggaggaaagtgcaatacatttg
tgttcatcgattgattctgctcgattaggttcatttttgtcggcaacttcttctttggag
gaaatttacaacgaagatgatgcggagcagcttttgcatttgtacaacaagtgccctgat
ccggaacgcttccagttgaatagcatcttaaaatacaaaaatagacttgacgagaaacga
gcggaaaaactgcgtgaaatgttggaacgggacatggctaatttgaaagccagacagcag
ttgcgtactgtagtaccgattcttaaattgagaatttcagattttgatgcgctgaaacgt
ggaaaaagttacattttgaatatatggcgtccagatgttgatgaattggatgcacggctg
cgagaaggggatgcttacagtttgtaccagttgcatgcaactttgtcaagaagtgccagc
ggtgaaattgaattgaactccgagaagagtactcgtattgtagaattgaatattcgatta
gcatgtgaacaaactttgattggagaaaaatttcaacaccgatcggtgacattgttgggc
gatttacaacggtcagattttcaagctgcatacgatgaagtggacattgtcggctttgtg
attgacattgcttccgctactgatgtcgacactgtttacttgggtgatcaggagatgaac
attgtcgctttgaaaattcccggtggtcttcaaaatttcggttgggaaaaagttctgagt
gttggaaatttcatcgcatgccaaaatttgcactacaaacgcttgtcaaaagcacgtatt
cctcaattatgcgctacaattgtcactgtgataaaagaaaatccaaaacagtcgaatttg
agttgtagcttgacaagtttaaaagcagaagtttcgaaacggcctgaatttttgaacgaa
gcacgttctgcttttaaagcgttactacgcggctcgtcaactcgtacttctctgaacact
tccgcttcttctcttcatttgcattccagtccgtctgtgaatcagcaattcaaatcaccg
aaatga
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integrated database retrieval system
