Trichinella spiralis: Tsp_00593
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Entry
Tsp_00593 CDS
T01609
Name
(RefSeq) ATP-dependent RNA helicase DDX19B
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03013
Nucleocytoplasmic transport
tsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
Tsp_00593
03015 mRNA surveillance pathway
Tsp_00593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_00593
Enzymes [BR:
tsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tsp_00593
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
Tsp_00593
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
10901856
NCBI-ProteinID:
XP_003376373
LinkDB
All DBs
Position
Unknown
AA seq
441 aa
AA seq
DB search
MSRNAEGEIVYSKKEIALLRKLINDTLVDDSNSVFKIESRYGLVFKAAAHFEHLPLSYDI
LKQLCTHGYFKPSKIQATSIQFMLADSPVDVAIQSQSGTGKTVAFVLCVLQRLQLDNRWP
QCLCLVPTYELAAQVRDVFCKLGSYSNSLSIALATRSTDATVPPHDQQITDQVIVGTSGT
VIRWMHQLKCFDPKKLSIFILDEADLMLNLGSQIIHIIQTLRADCQRLLFSTTYNNAVRK
LFLNVAKDPVTITVQNEGLVLDNIEQFYIKCKTNDEKLEAICNFYRTLVIGQCVIFCETR
STAHWLAVKIRAKGHHVAVLSGDMVLEQRAHAIKRFRKGEDRILIATNLCSKGIDIIQVN
IVINFDLPRATALEVDIGEYIHCIGHCGRFGRRGLVFTFITDIEGLCGVQMIEYYLSKPL
KMLDPFDQKNLTDLKSSLSVT
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgaaatgcagaaggcgagatagtttacagcaaaaaggagatagcacttttgaga
aaattgatcaacgacacattggtggacgactcgaattccgtgttcaagatcgaaagtcgt
tacggtttggtttttaaagcggcagctcattttgagcatttgccattaagctatgatata
ttgaaacagttatgcactcacggctatttcaaaccgtcgaaaatccaagcgacaagcata
cagttcatgcttgccgattcgccggtagatgtggctatacaaagtcaatccggcaccggc
aaaacggtggcttttgtgctgtgcgttctgcaacgcttgcaattggacaaccgttggccc
cagtgtttgtgcttggttccaacttatgaattggcggctcaggttcgcgatgttttttgt
aagttgggttcatattccaactcattgtccattgcattggctacacgttctacggatgcg
acggtcccacctcacgatcaacagatcactgatcaagtgattgttggaacttcaggcacg
gtgatacgttggatgcatcagttgaaatgcttcgatccgaaaaaattgagtattttcatt
cttgacgaagctgatttgatgcttaatttggggtcgcagattattcacatcattcaaact
ttgcgagcagattgtcaacgtctacttttctcaacgacgtataataatgcagtgagaaaa
ctgttccttaacgttgcgaaagatcctgtcactattactgtgcaaaatgaagggcttgtt
ttggataatatcgaacaattttacatcaaatgtaaaacgaatgatgaaaagctcgaagcg
atctgcaatttctacagaacattggttattggacagtgtgtgatattttgtgagacacga
agtactgcacactggctggctgttaagatccgtgccaagggccatcatgtagctgtatta
tcaggggacatggtcctagaacagagagcacatgcaattaaaagatttcgcaaaggcgaa
gaccgtattttaattgctacaaacctctgctctaaaggaattgatattatccaagtaaac
atagttattaatttcgatcttcctcgcgctacggctttggaagttgatattggtgagtat
attcattgtattggacattgcggtcgatttgggcgtcgtggtcttgttttcacctttatc
acggacattgaaggactttgtggcgttcagatgattgaatattatttgtccaaaccattg
aaaatgttggatccgttcgatcagaaaaatttaactgatttaaagtcaagtttgtctgtt
acataa
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