Trichinella spiralis: Tsp_00658
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Entry
Tsp_00658 CDS
T01609
Name
(RefSeq) ATP-dependent RNA helicase abstrakt
KO
K04648
dynactin 1
Organism
tsp
Trichinella spiralis
Pathway
tsp04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
Tsp_00658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsp04131
]
Tsp_00658
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_00658
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tsp04812
]
Tsp_00658
Membrane trafficking [BR:
tsp04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
Tsp_00658
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Dynactin complex
Tsp_00658
Cytoskeleton proteins [BR:
tsp04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dynactins
Tsp_00658
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
CAP_GLY
Helicase_C
Dynactin
Motif
Other DBs
NCBI-GeneID:
10901931
NCBI-ProteinID:
XP_003376446
LinkDB
All DBs
Position
Unknown
AA seq
1902 aa
AA seq
DB search
MSSSQLLDNSNSNLRVGDRVCLSDKRLLGIVAYVGTTQFSPGKWIGVILDEPKGKNNGLV
QGKEYFRCEANHGIFVRPAQVKLIENEPVGAENSKTLNPSTTSGLPRPKGDPKFVKKEIA
RPTPSSGSKQTSAREPQLKPRPFVKQSASLEKVAPTEGSGSDTQRMCQSDVVALDDRKQE
VEDVEVSRTTEDEKDLSCSGTAISAELVDSKRTEVANLNDDHHHHTMNEEGKQRLSVSKQ
VALLEREINAAEKQSVSLSMAEGVELEYLKSEVKDLSEKLETLRAKRHEDKQKLIDYERC
KIQLQQLTEYKNRMVEVHSELQRQLQQAKKEAREAIESREAYSEEMAGVSEAIEMATLDK
EMAEERAEMLCQELDVVKDRVRELEVELEILKNELNANGAPNSETPTPYQIKQLEQQNDR
MKEALVKVRDLSVQERATNERLNKELGVLKADMAELQKKYDRLKIAEEDFENQITELKDQ
VDAAVGAEEMVEHLTAKNLSLEEELRTLMETIEDFEQMRVVDEELQESSRETEKELRLEL
DRMHGQITELKQQLQLANSRMADRESIIAKFRQQTASLLEQIQNYKDQLSILTEPKKNIS
NENDDSTNDRSLSATSRQMSEIVDSQLCKIELDDSRRENQFLRIFFSDDFTNTGAFFILF
LSGDSDCISVNLVFTRMIEKAKLLIKHVNGIFPRVPQGVQREHLFLSHKGEQWSYSLNAL
SRCSVERLNKVAQLRSEITAQERLLSYYFNLLKENNLDENSSLRNMEKLLAFFKQFCETN
YTAEQFDSNAVLIDMLLSLLSVVSWLQFELQRAKLYLTDTSGSEKLLELFNKMSNSVGDM
EQFLVLAKTKVPKGDDLVVDHTSSHVGLLDSMSENVYAVENVAKILNQCCAKAASQASML
PDVHGIDASMMEEFLNDSYLEIMRPEKNESTESFFEFHLKNVVQYCEQLCNTFDENLKKK
SAEEKQQFPPILERAHIRKENIAECERLRKEIEKKDRDIMEIKRALKLKAEEISEMHVRK
EIAEKRLADSGKEGDERVVRLQNKLAEVQHDYKNKERRHAWSVCMLMLMLMLMLMLFSHY
EQTMDSLQQELDSLEKENASLKERIVVLSKKQLLIGVTKPLAAVSNSPLSTSASVQDQHE
GGFMIDQYVMQHWKSAQASEVGKRMQSAMESMKPLNIPKKHSGRSSIFCGIESDQLSHKR
HDEINQLLREVDRFHKELRKFLSENMIVSIRNTATSPDIVWSKYYRQLHRWNSLINWKNH
LKSKIQQCIVAQGYPAEAAGDLSSFAFFEASCEESVDLNERKKPFCSVTVPCSDSKGKVL
PIAATNDEIRNFFSHLAANAFTDWYIMDETGKELKSYRRKTESESDSLLATDDEDYVPYV
PLKKRREQQACLHFNFENVHLVKIGLLNRNSGTEGVGSTAKMVESESSAVDSAKKYGRTI
EFERSAVTLLEQHTELKKQTESHKEDAIEKKLKEEEQLLESFAGRTALMAAAEIAKDVKY
VEAIRTGWQPPRYVENLTYEQIVRFRKLHGILAEGENIPAPLRSFREMKFPKSILSALTK
KNITVPTPIQMQGLPIALKGRDMIGIAYTGSGKTLVFVLPLIMFCMEQQIRLPFIDNEGP
YGLIVVPSRELAKQIYDIVCYYCEALYADNLPKLRVCLCIGGVSLSEQLSTARRGVHIVV
ATPGRFIEILSKKVLTLDSCRYLCMDEADRMIDLGFEEDGQRQTLLFSATMPRKIQNFAK
SALVQPIVVNVGRAGAANLNVLQDVVNFVLLNDRVVDQIVEYVRNEDKLMQILSALEKTP
PPVLIFAEKKDDVDRILEYLLLKGLQAVAIHGGKGVHQQERLTALTSFQFGAKDILVATD
VASKGLDFPQIQHVINYDLPDDIENYALDVFSGVNNDSFYLN
NT seq
5709 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatcgcaacttttggacaacagcaatagtaatctgcgcgttggagatcgagtt
tgtttaagtgacaagcgtcttcttggaatcgttgcctacgtgggaacgacgcagttttca
ccaggaaaatggatcggtgtgatattggatgaaccgaaaggcaaaaacaacggcctggtt
caaggcaaggaatattttcgatgcgaagccaatcatggaatttttgttcgtccggcacaa
gtgaaattgattgaaaatgaacctgtcggtgcggaaaattctaaaacattaaatccgtcg
acgacatccggtttacctaggccgaaaggtgatccaaaatttgtaaaaaaggaaattgcc
cgtccaacaccgtcgtccgggtcgaagcagacatccgccagagagcctcagcttaaacct
cgtccatttgtcaaacagagcgcgtcgttggaaaaagtggcaccgactgagggttcggga
tccgacacgcaacgcatgtgtcagtcggatgtggtggcgttggatgatcgcaagcaggaa
gttgaagatgtggaagtgagtcggaccacggaagatgaaaaggatctcagttgtagtgga
actgcaatatcggctgaattggttgattcgaaacgaacagaggtggcaaatttgaatgat
gaccaccatcatcacacgatgaatgaagagggaaaacaacggttgagtgtcagtaaacaa
gttgctcttttggaacgggaaatcaacgcggccgaaaagcagtcggtctcgttgagcatg
gccgaaggtgttgagttggaatatttgaaaagtgaagtgaaagatttgtctgaaaaattg
gaaactttgcgcgccaagcgacacgaagacaagcaaaagttgatcgactacgagaggtgc
aaaattcaattgcaacagttgaccgaatataagaaccgaatggtcgaggtgcattcggaa
ttgcagagacaattgcaacaggcgaagaaagaagcccgtgaagcgatcgaatccagagaa
gcatattcggaagaaatggccggcgtgtccgaggcgatcgaaatggctactttggacaaa
gagatggccgaagagagggccgagatgctttgccaagagttggatgtggtgaaagatcgg
gttcgggagttggaggtcgagttggaaattttgaaaaatgaactgaacgcaaatggagcg
ccgaattccgaaacgccaacgccctatcaaattaaacagctcgaacagcagaacgaccgg
atgaaagaggcgttggtcaaagtgcgcgacttgtcggtccaagaacgagcgaccaacgaa
cgtttgaacaaggagttgggcgttttgaaagcggatatggccgaattgcagaaaaaatac
gaccgtttgaaaattgccgaagaagattttgaaaatcaaatcaccgaactcaaagatcag
gtcgatgctgctgttggtgccgaagagatggtggaacatttgactgcgaaaaatttgagt
ctcgaagaagaactccgaacattgatggaaacgattgaagatttcgagcagatgcgtgtt
gtcgacgaagaattgcaagaaagttctcgcgaaactgagaaagaactacgtttggaactc
gaccggatgcacggccaaattaccgagctcaaacaacaattgcagttggcaaattccagg
atggccgatcgtgagtcgatcattgcgaaatttaggcaacagactgccagtttgttggag
cagattcaaaattacaaagatcagttgtcaattttgactgaaccgaagaaaaatatttcg
aatgaaaatgacgattcgacaaatgaccggtcactgtcggctacttcacgtcaaatgtcc
gaaattgtcgacagtcaactgtgcaaaattgaactagacgatagtcgtagggaaaatcag
tttttgcgtatctttttctcggatgattttaccaacactggcgcttttttcattttattc
ctttcaggtgatagtgattgcatttcggtaaatttggtatttacgaggatgattgaaaaa
gccaaacttctaatcaaacatgtgaatggaatttttccaagagttccacaaggtgttcaa
cgagagcatcttttcttgtcgcacaaaggcgagcagtggagttattcgttgaatgctctc
agtcgatgcagcgttgaacgtttgaacaaagttgctcaattgcgctctgaaattacagct
caagaacgattattatcttattatttcaatcttttgaaagagaacaatttagatgaaaat
agttctttgcgaaatatggaaaaattgttagcattttttaagcaattttgcgaaacaaat
tacacagcagagcagttcgattcgaatgcagttttgattgatatgcttttatctttactg
tcggttgtttcttggttgcaattcgagctccaacgtgctaaactttatctcaccgatacc
agtggcagtgaaaagctgttggaattgttcaacaagatgtcgaacagcgttggcgatatg
gaacaatttctcgtattggccaagacgaaagttccaaaaggcgacgatctcgtcgtcgac
cacacctcctctcatgttggacttttggactcgatgagtgaaaatgtgtatgcggttgaa
aatgtggcgaaaatactgaaccagtgttgcgccaaggccgcttcacaagccagcatgctt
cctgacgtgcatggaatcgacgcttcaatgatggaagaatttttgaacgattcctacttg
gaaataatgcgaccggagaaaaatgaatcgacagaatcatttttcgaatttcacctgaaa
aatgttgtccagtattgtgaacaattgtgcaatacgtttgacgaaaatttgaaaaagaag
tcagcggaggagaaacaacaatttccaccgattctcgaacgtgctcatattcgaaaggag
aatattgccgaatgcgaacgtttgaggaaagaaattgaaaaaaaagatcgcgatataatg
gaaataaagcgagctttgaaattgaaggcagaagaaatttctgaaatgcacgtcagaaag
gaaattgccgagaaacgactggcggattcaggaaaagaaggcgacgaacgtgttgtccgt
ttgcagaacaaattggccgaagtgcaacatgattacaaaaataaagaacgacggcatgcg
tggagtgtgtgcatgctgatgctaatgctaatgctaatgttgatgctgtttagtcattat
gagcagacgatggattcgttgcagcaggagttggacagtttggaaaaggagaatgcaagt
ttgaaggaacggattgtcgttctttccaagaagcaactgttgatcggtgtcaccaagccg
ttggcagcagtttcaaattctccactatctactagtgcatcggtgcaggaccaacatgaa
ggtggttttatgattgatcagtatgtgatgcagcattggaaatcggctcaagcatccgag
gttggcaagcgaatgcaaagtgcaatggaatcgatgaaaccgttgaatattcccaaaaag
cactccggaaggtcttcgatattttgcggtattgagtcggatcagttgagtcacaaacgt
cacgacgaaatcaaccagctacttcgtgaagttgatcgttttcataaagaacttcgaaaa
tttttgtcagaaaacatgatcgttagcatcagaaatactgcaacatcgcctgatattgtt
tggtcgaaatactacagacagctgcatcggtggaattcattaattaattggaaaaatcat
ctcaaatctaaaattcagcagtgcattgttgcgcaaggctatccagctgaagctgcaggc
gatctttcatcttttgcattctttgaggcaagttgtgaagaaagtgttgatttgaatgaa
cgcaaaaaaccgttttgctctgtaactgttccgtgttctgattcgaaaggaaaagttttg
ccaattgctgctacaaatgatgaaattcgcaatttcttttcacatttggcggccaacgcg
ttcactgactggtatataatggatgaaacaggaaaagagttgaaaagttacaggaggaaa
acagagtccgaatcggattcgttgttagcaacggacgatgaagattatgtaccgtatgta
ccgttgaagaagcgtcgtgagcagcaggcttgtttgcattttaattttgaaaacgtgcac
ttggttaaaattggattattgaatcgaaatagtggaactgagggcgttggttcgactgcc
aaaatggtcgaatcagaatcttcagctgtggacagcgcaaaaaaatacggccgtactata
gaatttgagagatcagctgttacattgcttgaacagcacaccgaactgaaaaagcagacc
gaatcgcataaagaagatgcaatcgaaaagaagctcaaagaggaagaacagttgttggaa
agctttgctggaagaacagcattgatggctgcggcggaaatagctaaagatgtgaaatat
gtcgaagctattagaactggatggcaaccgccgagatatgttgagaatttgacttatgag
caaatcgtgcgatttcgaaaacttcacggcatccttgccgaaggagaaaatattccagca
ccactgagaagtttcagagaaatgaaatttccaaaatcaattttatccgcgttgacgaaa
aagaacataactgttccaactccaattcagatgcaaggccttccaatagctttgaaaggt
agggatatgatcggcattgcgtacacaggatcaggaaagactcttgtttttgtgttgcct
ttaattatgttctgcatggaacaacaaattcgcttgccattcattgataacgaaggtcca
tatggattaatcgtcgttccttcaagagaattggcaaaacaaatttacgatattgtttgt
tattattgtgaggccctgtatgcggataatttaccgaaactgcgcgtatgtctttgcatc
ggtggtgtctcgctttcagaacaactttccacagccaggagaggagtgcacattgtagta
gccacacccggaagatttattgaaatactttccaagaaagttttgacattggacagttgt
cgttatttgtgcatggatgaagcggatcgtatgattgatcttggatttgaagaagatggc
caacgtcaaacgttgctcttttctgctacaatgcccagaaagattcaaaattttgccaaa
agtgcactggtgcagccgattgtagtgaacgtgggacgtgcaggcgcggcgaatttgaat
gttcttcaagatgtagtcaattttgtgcttctaaacgacagagttgttgatcaaattgtg
gaatacgtaagaaatgaagacaaactgatgcaaattttatctgccttagaaaaaacaccg
cctcctgtgctgatatttgcggaaaagaaagatgacgtggacagaattttagaatatttg
ttactcaaaggtttgcaagcggtggccattcacggtggcaaaggtgtgcatcaacaagaa
cgtcttacggcattaaccagctttcaattcggggcgaaagatattttagttgcaacagac
gttgcttccaaaggactcgacttcccccaaatacagcacgtcatcaattacgatttacct
gacgatattgaaaattacgccctcgatgtattcagtggggtcaacaatgactccttctac
ttgaactga
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