Trichinella spiralis: Tsp_00718
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Entry
Tsp_00718 CDS
T01609
Name
(RefSeq) ubiquitin fusion degradation protein 1-like protein
KO
K14016
ubiquitin fusion degradation protein 1
Organism
tsp
Trichinella spiralis
Pathway
tsp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Tsp_00718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tsp03009
]
Tsp_00718
Ribosome biogenesis [BR:
tsp03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Tsp_00718
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
P16-Arc
UFD1_N1
UFD1_N2
CDC48_2
Motif
Other DBs
NCBI-GeneID:
10903899
NCBI-ProteinID:
XP_003376462
LinkDB
All DBs
Position
Unknown
AA seq
571 aa
AA seq
DB search
MSCSDVKCNFNGLKSINFLQPFKVLKDVLRCVISEGHKIHNMAKNTLNTSFRNIDVDVQN
EEIFGDEADVETAYVGPNESAINNLLHNNRLSEALQACLKNPPFRSKSQESKDKCTQLVI
RVLCSFKQSDVQKAVNNLDVDQLDILMKYIYKGFEFGQDGSSPALLFWHKIVFGKAGDGA
IMRAVSALPVFGAESTMFDLTALFPQEIRPYNTRYRCFSVAMCPSSVSIERTRNIDYGGK
VLLPHSALDWLTRLHISYPMLFKITNSNKDVKRSTHCGVLEFHQEEGKCYIPHWMMRNLL
LCEGDMIQIESVDLPVGTYVKLKPQDSRFVGLANPSVLLELKLRNYACLTKGDMIAIEYN
DKVMEFLVQELRPTDAVSIIECDINVRRSAKSVCFTDEYLVDFDVPEDQPKSTSTSAALC
LPASFNFIIFYNYKIFTAPSLPHVENSTAFPGKAFRLDGKERPHKQLRLTTDTDVTSVSE
LYDADCNFDYNKLRFHRLSAERRLLAAFDHSVQISALVELFAQIDLQFPQISIPTRVEPQ
ILDRNFSPVACCQICPFAISTTKPFQNQHRN
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgtcatgtagcgatgtgaaatgtaattttaatggtttaaaatcaattaattttcttcaa
ccatttaaagtactgaaagatgttctgaggtgtgtaatttctgaaggacataaaatccat
aacatggcgaagaatacactgaacacttcttttcgaaatattgatgttgacgtgcaaaat
gaagaaatttttggtgacgaagccgatgtggaaactgcttatgttggaccaaatgaatct
gcaataaacaatttgttgcataacaatcgtttatctgaagccttacaggcgtgtttgaaa
aatcctccttttagaagcaaaagtcaggaatctaaagacaaatgcactcagctagtaatt
cgagttctttgctcttttaagcaatcagatgtgcaaaaagctgtcaacaatctggatgta
gatcaactagacatattgatgaaatatatttacaaagggtttgaatttggccaagatgga
agttcgccggcactattattttggcataaaattgtttttggaaaagcaggcgacggcgcg
attatgcgagctgtttcagcattgccagtgtttggagcagaaagcaccatgtttgatttg
acagccttatttccgcaagaaattcgtccatataatacacgttatcgttgtttttctgtg
gcgatgtgtccctcttctgtatcaatagagcgaacccgtaatatagattatggaggaaaa
gttttattaccgcacagtgcattggattggctaacacgactacacatttcatatcctatg
ttattcaaaattactaactctaacaaagatgtgaagcgtagcacacattgtggagttttg
gaatttcaccaggaagaaggaaaatgctacattccacattggatgatgcgcaacttattg
ttatgcgaaggtgacatgatccaaatagaatcggtagatctgcctgttggtacgtacgta
aagttgaagcctcaggattctcgatttgttggtttggcaaatccaagcgttctcttggaa
ttgaaacttcgaaattatgcctgtttgacaaaaggtgacatgatagcgatcgagtataat
gacaaagtaatggaatttttggtacaagagcttcgtccaaccgatgctgtttctataatt
gaatgtgacattaatgttcgtcggtcagctaaatcggtgtgttttacagatgaatacttg
gtggatttcgatgttccagaagatcaaccaaaatcgacttccacttcagcagcactttgt
ttaccggcaagttttaattttatcattttttataattataaaatatttacagctccgtct
ttgcctcatgtagaaaattcaacggctttccctggtaaagcttttcgcttggacggtaaa
gaaaggccacataagcagttgcggttgacaacggatactgacgttacgagcgtttctgag
ttatatgatgcagattgcaatttcgattacaacaaacttcgatttcatcgactttcagct
gagcgtcgactattagctgctttcgaccattcagtgcaaatttcggcacttgttgaactg
ttcgcacaaatcgacttacaatttccccaaatatccattccaaccagagtcgagcctcag
attctggatcgaaacttttcacctgtcgcatgttgtcaaatttgcccatttgccatttca
acgacaaagccatttcagaaccaacatcggaattaa
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