KEGG   Trichinella spiralis: Tsp_00894
Entry
Tsp_00894         CDS       T01609                                 
Name
(RefSeq) hypothetical protein
  KO
K06100  symplekin
Organism
tsp  Trichinella spiralis
Pathway
tsp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Tsp_00894
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsp03021]
    Tsp_00894
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_00894
Transcription machinery [BR:tsp03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     Tsp_00894
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     Tsp_00894
    U7-dependent histone pre-mRNA processing factors
     Tsp_00894
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N Xre-like-HTH HTH_26 HTH_3 HTH_31
Other DBs
NCBI-GeneID: 10904394
NCBI-ProteinID: XP_003376630
LinkDB
Position
Unknown
AA seq 907 aa
MEMEVSILLKQAEKTTNAEERLRLLNEVEQLIMDDKSSSLLNDFFDEIVHLCGSVCRTEV
YFVERAVPTVLNMLSEADDHLLKKILASMTLIYRSALKWILQKPPSQFGVDQTWHAVSEF
KTGVLSWLESENEGIKIYVFKFLEHCILAQIEESANLKSSAYGCQLATELQASNDLLFSS
LTRQLVAPHISLSGLSVCLKSLTDIVRNDAEFLDRFLDCCKKLIVDIPPTLSHSQMESLF
KVMRFHLTTLINLPCSSEAVLEIAAILQKLGISPAELARLTGISKSKLKRSATGDNLNAA
ECSAKKRKSDPQAQLKRICSFLVDTLTPDNCVELVLASFPHLPKIMPEKFLREYVPIDSL
PINEQIERISSTIASVISSAGLSCNLKLTNKRQKILTETLSSGELALRLLYYQYSIYLQL
RRQGNTTATERALNQYNNTLDSLLSALLSGGDIQLNLFCRLVIYAPQLSVQALQVLKQGC
KQRSTYIPCLNMFTSVIKHRPGQRKELFAEFASLSTFDDDTAIVNGWLEKLNSLYRYPPT
KDLVKELALNHLHLLEQAVPPDYLLLDENEEKKWDERSVRICFRVYCHLLPQQVDFLQLL
PDVYVACGVNVKRLINTYLSKPIKQSSIPANDIVELVKQCPRNAEALIPRILEPWLDKNS
LNAELVNAVWTLYTKRRPDVRFLVPILPALNKEQFISLLPKLIRLPAQIFKMITGKVVCS
SSGSKTVITADELWLEMCELEVTNENDSTQLLNLFGALLQNKHMFSSDLLSGIIKQISER
QVVPAIFFHTIPLLLEAQASLDNLIGSILQKFVTKQIWKQGEDAWQAFVQCSSKLKIHGY
AALLQLPASQLRNAIETCPELRQDLLKHVENMEIQQRASITKDCINELEQQQQIAVENDD
ETKAVSC
NT seq 2724 nt   +upstreamnt  +downstreamnt
atggagatggaagtgagcattttattaaaacaagctgaaaaaacaacaaatgcagaagaa
cgcttacgattgttaaacgaagttgaacaattaatcatggatgacaaaagttcatctctt
ttaaatgactttttcgatgaaattgttcacttgtgtggatcggtttgtcgtacagaagtg
tatttcgtcgagcgtgctgtaccaacagtattgaatatgctcagcgaagcggatgaccat
cttttgaaaaagattcttgcgtcgatgacgttgatttatcgttcggcattgaaatggatt
ttacagaagccaccatctcagtttggcgtcgatcaaacgtggcatgctgtgagcgaattt
aaaactggtgtattatcatggcttgagtctgaaaatgaagggatcaaaatttatgtgttt
aagtttttggaacattgcattttggctcaaattgaagaatcggcgaatctgaaatcttct
gcatacggttgtcagttagcgactgaattgcaagctagcaacgatctgttgttttctagt
ctcacacgacaactggtcgcgccgcacatttccctcagtggtctcagcgtgtgtttgaaa
agtttaactgatattgttagaaatgatgcggaatttttggatcgatttttagattgttgc
aaaaaattaattgttgacatcccgccaactttatcccacagtcaaatggaaagtttattt
aaagtgatgcgatttcatttgactactttgatcaatttgccatgctcttctgaagctgta
ctggaaattgcggcaattttacaaaagcttggcatcagccctgccgaactggcacgtctg
acaggtattagcaagtcgaaattgaaaagatcagctactggggataatttgaatgctgct
gaatgttcggccaaaaagaggaaaagtgacccacaagcgcaattgaaacgaatatgcagt
tttcttgttgacactttgaccccagacaattgtgtggagctagtattagcctcttttcca
catttgcctaaaattatgccggaaaagtttttgcgtgaatacgtaccaattgattctttg
cctattaatgagcagattgaacgtatttcaagtaccatcgcatctgtaatttcttcggct
ggattgtcttgcaatttgaaattgaccaataagagacaaaaaattctcaccgaaacttta
agttcaggtgaactggctttgcgattactttattaccagtattcaatttatttacaactg
agaagacaaggtaacacaacagcaacggaaagagccttaaaccagtataacaacacactg
gatagtttgttatctgctttgctatccggtggtgacattcagcttaatttattctgtcgt
ctggttatctatgcacctcagttatccgtgcaggcgttgcaagtgttgaaacaaggttgc
aaacaacgcagcacttacattccttgcttgaacatgtttacttcagtaattaagcatcgt
cctggtcagagaaaggaattgtttgctgaatttgctagcttgtcgacatttgatgatgac
acggcaattgtaaatggttggcttgaaaagttgaattcactttacagatatcctcctacg
aaagatttggtaaaagaattggcactgaatcatctgcatctacttgaacaagctgtacct
ccagattatctgttgttggatgaaaatgaagaaaaaaagtgggatgaaagatcagttcga
atttgttttcgtgtgtattgtcatttacttccacagcaagttgactttttgcagttattg
ccagatgtatacgttgcttgtggtgtgaacgtgaagcgtttgataaatacatacttgtcc
aagccgataaagcaaagttccatccctgcgaatgacattgtagagttggtgaaacagtgt
ccaagaaatgctgaagctttgatacctcgcatactggaaccttggttggataagaattca
ctgaatgccgaattagtgaatgcagtttggacgttgtatacaaagcgtcggccggatgtt
cgatttttggtaccgattcttccagctttgaataaggagcagtttatcagcttgttgcca
aaattaattcgtcttccagcgcagatattcaaaatgatcactggcaaagtagtctgtagt
agttcaggatcgaaaactgtcatcacagctgatgaactttggcttgagatgtgtgagctc
gaagtgacaaatgaaaacgattccactcagttgttgaatttgtttggtgcattgttgcaa
aacaaacatatgtttagcagtgatttgttaagtggtataatcaagcaaattagcgagcga
caagtggtcccagctatttttttccataccattccattgctgcttgaagcacaagcatca
cttgacaatctgattggtagtattttgcaaaaatttgtcaccaaacaaatttggaaacaa
ggagaagatgcatggcaggcttttgtgcagtgttcatcgaaactcaaaatccatggctat
gctgccttgcttcaacttccggcttcacagcttcgaaatgccattgaaacttgtccagaa
cttcgccaagatttattgaagcatgttgaaaatatggaaattcaacagcgagcatcgata
acaaaagattgcataaatgaactggagcagcaacagcaaatagctgttgaaaatgacgat
gaaaccaaagcggttagctgttaa

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