Trichinella spiralis: Tsp_00956
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Entry
Tsp_00956 CDS
T01609
Name
(RefSeq) SWI/SNF complex protein
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
tsp
Trichinella spiralis
Pathway
tsp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
Tsp_00956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsp03021
]
Tsp_00956
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_00956
Transcription machinery [BR:
tsp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
Tsp_00956
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
Tsp_00956
PBAF complex
Tsp_00956
GBAF(ncBAF) complex
Tsp_00956
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
10904864
NCBI-ProteinID:
XP_003376775
LinkDB
All DBs
Position
Unknown
AA seq
490 aa
AA seq
DB search
MSQLPGQVFMDVPPTNYPVNSVTFYCWHIAGGSPAQMGVRMNLPQGPRYFPPGPAPVHLQ
ASGMMNSPIRGHLSQAVQNSSVQRRVPSSQVVNLQAKVLPKKPKRVADREIPVAALVKFV
PEAKAYADLLAFEQKLDMVISRKRANIQEALKRPLKIKRKLRIFVSHTFISGKAMENEEE
SSCFSQWELRVEGRLLEDLMPTGSLAQTPEANRHSKRKFSSFFKTLIIELDKELYGPDSH
LVEWHRTAQTTETDGFQVKRPGDQNPMKYKLDPRLGRLLGVHTETRIGILEALWQYIVQH
KLQDHHERDLINFDRYLEQIFQCQRLRFMEIPQRLNPLLQPPDPIIIHHIITVDGNESQR
CKCYDVDDDPCRAVMMQFLQSQQSQQEICAFDAKIFETVDQIKQLKLQRDFFLRFAEDPQ
GFLQHWLLSECKDLKNMHNHVSQPEADRRSEFYDQIWMKEAVKRFLHTVVLQKKQEIDSG
VASSSSNTMQ
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagcttccgggacaagtgttcatggatgttccaccgacaaattatccggtcaac
agtgttactttttattgttggcacattgcaggcggatcgcctgctcagatgggcgtgaga
atgaatcttccacagggcccgcgttattttcctcccggacctgcgcctgtgcatttgcaa
gcgagcggtatgatgaacagccctatacgtgggcacctcagtcaagcggttcagaacagt
tctgtgcagcgtcgcgtgccgtcttcacaggtcgtaaatctgcaggccaaagtgctacca
aaaaagccgaaaagagttgcagaccgagaaattcctgtcgcggcactggttaaatttgtg
ccagaagcgaaagcttatgcagatttgttagcgtttgagcagaaactggacatggttata
agccgaaaacgtgcaaatattcaagaagcactaaaacgaccgttgaaaataaaacgaaaa
ttgagaatttttgtttcgcacacgtttataagtggaaaagcaatggaaaatgaggaagaa
tcatcctgcttttcgcagtgggaattgcgcgttgaagggcgccttttggaagatttgatg
cccactggctctttggcacaaacgccagaagcaaatcgacattcgaaacgaaagttttca
tcattttttaaaactttaataattgaattggacaaagagttgtacggtcctgatagtcat
ctggtagagtggcatcgaactgctcagacaactgaaacggacggatttcaagtgaaacgg
cccggtgatcagaacccgatgaaatataaactggatccacgattgggccgacttttgggt
gtacatactgaaacacgaataggtattttggaagctctatggcaatacattgttcagcat
aaattacaagatcatcatgaacgagatttaatcaattttgatcgctatttggagcagata
tttcaatgtcaaaggttacgatttatggaaatccctcaacgattgaatcctctactccaa
cctcctgatcctataatcatacatcacataattactgtagatggtaatgaatctcaacgc
tgcaaatgttacgacgtggatgacgatccctgtcgagcagtgatgatgcagtttttacaa
tcgcaacaaagtcaacaggaaatttgcgcttttgatgctaaaattttcgagacggttgat
caaattaaacaacttaaacttcagcgtgacttttttctccgttttgccgaagatccacag
ggatttctgcaacactggcttttgtccgaatgcaaagatttgaaaaacatgcacaaccat
gtaagccaacctgaagcggatcgcagaagtgagttttacgatcaaatatggatgaaagaa
gcagtgaaacgttttctgcatactgtggttttgcaaaagaaacaggaaattgattctggc
gtagcttcttcctcttctaatacaatgcaatga
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integrated database retrieval system
