Trichinella spiralis: Tsp_01087
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Entry
Tsp_01087 CDS
T01609
Name
(RefSeq) CCR4-NOT transcription complex subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tsp
Trichinella spiralis
Pathway
tsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tsp_01087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_01087
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Tsp_01087
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Tsp_01087
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5646
Motif
Other DBs
NCBI-GeneID:
10905102
NCBI-ProteinID:
XP_003376851
LinkDB
All DBs
Position
Unknown
AA seq
794 aa
AA seq
DB search
MRTKIRHNDYLSVWLFKSVRQSSSKLQRPTYDTSTKQNSPRFRQSQLASSGSYRTVYFFW
SCVLIRKCEEHTVPLMNLVRSAISDRVKSLYCWKLQAMADKRKLQAEMERCLKRVQEGVE
LFDQIWEKVHEAANLNQKEKFEADLKKEIKKLQTISFQRMRDQIKGWQNSNDVKDKTQLC
DSRRLIEQKMEQFKIVERETKTKAYSKQGLGAEQKIDPKEKEKEEIIGWLQDSIGTLNQQ
SDVFEGEMEQINAMFGKKRKPDRDKNMHVFLVLKKQDRLDDLLRHIERHKFHVTKLESMM
RLLVNNTIDTQLEPDFDENEFIYDDLNLGNVESMLAQQLGSVPRADERGEENDLTHSESS
SLAPSSRPSSTHSKAMCSSPTKEFEERKTRYPSESTETAKYVISNLENLSKSAPSTPVKL
NRMEAPYVALNQIIPILNPAVPATSVPYNSVVTGASSRQQKSGFTSLQTESFDTVTNSFN
KLFVSSEVLAKERWLETSSVSKPVMQPQLPAIDNDSLSATVDLTVNVEADSCNSASIVMN
GPACTADLLTQISLSLRAANISPVAGVHSPSSFLNSTNNLSGLRTVPTSLVDSASWRCEM
NSSPAAQQAKNSFTSYHSLPGPSINSLATASTLTSNSQPLILDPILGAVPLGKKPLTMKQ
EHCLKMAGEAMKQIPFPSDKEKARISLERVPYLTPPYYPQSPLPLSDTFEHFNRLSPETL
FFVFYYLQGTKSQYLAAKALKRQSWRFHTKYMMWFQRLEEPKGTYIYFDFERWMQRKKED
FTFEYRYLEDKELP
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgagaacgaaaatacgacacaatgactacctaagcgtctggcttttcaaaagtgtgcgt
caatcttctagcaaacttcaaagaccaacgtatgacacatctacaaaacagaacagcccg
cgcttccgccaatcacaacttgcatcatcaggaagctatcgaactgtatactttttttgg
tcttgtgtacttattagaaagtgtgaggagcatactgttccgttgatgaatttggtcagg
tcggctataagtgatagggtgaagtcgctatattgttggaagttgcaagcaatggcagat
aaacggaaacttcaagccgaaatggaaagatgcttgaaaagagtgcaagagggtgttgaa
ttgttcgatcaaatctgggagaaggttcatgaagccgctaatcttaatcaaaaagagaaa
tttgaagctgatttgaaaaaggaaattaagaagttgcagacaatttctttccagcgaatg
agagatcagattaaaggatggcaaaattcaaatgatgtcaaagataaaactcagctatgc
gattctcgaagattaattgagcagaaaatggagcagtttaaaattgtggaacgggaaacg
aaaacgaaagcttacagtaagcaaggtcttggtgcagaacaaaagatcgacccaaaagag
aaagaaaaggaagaaatcattggttggcttcaggattctattggaacgttaaatcaacaa
agcgatgtatttgaaggagaaatggaacaaattaatgccatgtttgggaaaaagaggaaa
cctgatcgagataaaaatatgcatgtttttcttgttttaaagaagcaagatcgattggat
gatttgctgaggcatatcgaaaggcataaatttcatgtcacaaagcttgaatcgatgatg
cgtttactggtgaacaataccattgatacacagctggagccggactttgatgaaaatgag
tttatatatgatgatctcaatttgggaaatgtagagagcatgttagctcaacaacttggt
agtgtacctcgtgcagatgagcggggagaggagaatgatcttactcattctgaatcctca
agtctcgccccttcttctaggccttcttcaacgcattccaaagcaatgtgcagttctccc
accaaagaatttgaagaaaggaaaacccgatatccgagtgaaagtacagaaacagcaaag
tatgtaatttcgaatttagaaaatcttagcaaatcggcaccatctactcctgtgaagtta
aataggatggaagcaccttatgtggcgctgaatcaaattatcccaattttgaatcctgca
gtaccagcgacatctgtaccttacaatagtgttgtaactggcgcttcaagccggcaacag
aagtctggttttacgagcttacaaacggaatcttttgatacagtgactaattcttttaac
aaattatttgtatcttctgaagttctggcgaaggaacgttggttggaaacgtcttcagtt
tctaagccagtcatgcaaccacaactaccagcgattgataacgattcactttcagcaaca
gttgatcttactgtcaatgttgaagcggattcttgcaattctgcttcaattgtcatgaat
ggtcccgcatgcactgctgacctattaacgcagattagtttatcgcttcgtgcggccaac
atttcccctgtggctggggttcactcgccttcgagctttttgaacagtacgaataatctc
agcggattgcgtactgtgcctacatcgctggtcgattctgcgagctggagatgcgaaatg
aattccagccctgctgcacagcaagcaaaaaattcttttacaagttaccattctttaccc
gggccgtccataaatagccttgcaacggcttccactttgaccagtaattctcaaccactg
atattggatccaatattgggagctgttccacttggtaagaaacctctcaccatgaagcaa
gagcactgcctgaaaatggctggagaggcgatgaagcagataccttttccatcggataag
gaaaaggcgagaatttcgttggaacgagtgccgtatttgactcctccatattatccacaa
tctccacttcccctatcagatactttcgaacatttcaatcgtctttctccggaaacatta
tttttcgttttctattatcttcagggaacaaagtctcagtacttagccgccaaagcattg
aaacgtcagtcttggcgttttcacactaaatacatgatgtggtttcaacgactcgaagaa
ccaaagggaacttatatttattttgatttcgaacgatggatgcagcggaagaaggaagac
tttacatttgaatatcgttatttggaagataaagagcttccttaa
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