Trichinella spiralis: Tsp_01223
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Entry
Tsp_01223 CDS
T01609
Name
(RefSeq) putative ribosomal protein S7e
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_01223
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
Tsp_01223
microRNA pathway
RISC loading complex
Tsp_01223
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribosomal_S7e
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Dicer_dsRBD
ResIII
DEAD
Dicer_platform
Helicase_C
PAZ
dsrm
DSRM_2
PhoH
SWI2_SNF2
Dicer_PBD
nSTAND3
DUF7615
Malic_M
AAA_19
Motif
Other DBs
NCBI-GeneID:
10905596
NCBI-ProteinID:
XP_003377020
LinkDB
All DBs
Position
Unknown
AA seq
2029 aa
AA seq
DB search
MGMAASSTNGDAMEDESEMEAFDVVRIADDVIQRLRFGSQDIFKSEDPVIDDMLIESAYR
IQYETLRQDLIATQEEVARLKRQLQERDYAERKKGRSGTVEVGTKIEKHCSRRENQKLSN
ELVKLLLILEFMFTVQYSCLSNSATFRKNNIDMVYGTLNNLVRASKDCVTELERHVSQVL
YDLKHSQDLQYYVKEDLTFVSAKEIDVGNRAVIIVFVPFPQYKQYRRILVRLIHEVEKKF
GGKHVVFVAKRRILPKPTRGKRKITQKQKRPRSRTLAAVHDEYLNDIVFPAEIVGKRIRV
RLDGSRLLKVHLDRNQKAAVEHKVNRMEKEQSGRLENVRLYQKELLECAKKENVIVTLGT
GTGKTFIAVMLIREMSESVHQPLKEGGKRSLFIVDKVPLVKQQAEHIRINTNLKVGEFHG
ALGVDCWSAKIWMEFFDKFHVLVMTAEIFRNILTHGFIKFDIVNLIVFDECHHATKQHPY
KKIMELYKLCYNNNDSGIQPRILGLTASVMNKKGDEIGLQKAIRNLETTLCSRVVGTSHA
ELLKLYSADPHIAIVACKNDNKYDWHELDLFFQHLVRSTQKSLERCGRECEGNVSLYIQH
VCDVLAKLDSIMGQLGPWCALQVCKQMLQSTTNLATRISTLLADDEDNNLFSLFTSGSDA
SSSVWLEVLKTCLKVTSVKLKRHIGLVDSVQKLKCVFIRQQFVDQQQQAVWNCIRQSTPG
SLLYSGELNFQLEKNNSRKFENTNGANGPPFQILIDTAKKLQPRSYSYLEVDYVVGSRMS
AEVAEPSFARQEEVLKNFRHGKLNLLAATSILEEGIDVRHCNYVIRFDTPLTFRSFVQSK
GRARQKIAYYTILVQDRFLESFQEMLNSFVETEKFLKVNGRDLNILTRTKDRDRSYSGNN
DQVDNCRKEVNLPNGDVDSLVEPYYTYFEENGLVKKAACLVLSSAHNVIKRYCNKLRKDR
FADSSPKFSVQTILNKDLSISYVATVQLPTTSPLKKKIEGKPMQNAKLAEMAAAFETAKM
LHAMGELNEFLIPPVTVRKEIELKEDEQFFSISSRSYYLKEVPDALYKAIPRADQKSYLY
AISISSIESFLPRLGILVSKPIGNLPGFSVFTDESYIDVEIEFVEETSYSAHQLDILTSF
HCCIFKNYLFREEEDFIFDPENAACSYLIVPLKCEYNSKCSVDLSTAEKIINWSKDVSHI
PQQRSEKFIMNSSSYFNAVVYPWYKNKNDRDFYYFVTAVDNTCTPMSPFPLKMYRSFAEY
FEVTKQVKVLDKNQPLLSVKMVSFKRLNLLCEKPISILLFDFDDDANSCHCKLVPELVII
HPMPASMWRCLIFLPTVLYRMNHLLIAEQLRLQILREAMFPGEVLEENCEIQPLNKDWYL
LASRLNDMCIVDNQLPVKLSKLSVNSNSAAAATATGSIDPETQALLEEFDVRFCNACPTV
PVDDQLDILTGNSVAESHTAESNDECLFDTHFSLQLLSSIQPQQQPLEKVDFGIVESDGE
SDFFVAAPALPESELNLFVEPSDVSDTATAPAQHRPGPQCRDVLRALTLRKAQDMFDLES
MEALGDSFLKFIVSLHVFIKETNWNEGRLTSLRSEIVSNTNLFNLGKQKLLQAKLTAVPF
DPTAQWLPPCFRSLAALESGYESVNELIDEGDSKKKNEALKANTPTPVVVAERYEMCSLN
RTHQVIYDKSIADCVEALVGCYLLEAGMRPAIKLLKWFGIDIDGNLMNLLSSSSSSSSSS
STAFCSENCVLIGPEAKIHSIWTAYDLNSFEAKIGYRFTNKAYLIQALTHSSYNEVETPV
TDSYERLEFLGDAILDYLISRHLYSSKRIRSPGLLSDLRAALVNNYFLYFNAELLSVNER
FVLAMRGLKESVNFHNELYMMEEEQDDDEKETSEFAEHVEVPKPLGDIFESVAGAIFLDS
HCSLATVWQVYYNMIAEEIGKQRSDFTSFNKCLCHPPISPVRHLLELEPERVQFNILDRE
EGNSGVHVQVVVTGKGSFIGSGKSYRTAKHAAAKKAVRELYPTSNHFII
NT seq
6090 nt
NT seq
+upstream
nt +downstream
nt
atgggcatggcagccagttcaacgaatggagatgctatggaggacgaaagtgaaatggaa
gcttttgatgtggttcgtatagctgatgatgttatacagcgtcttcgatttggcagtcaa
gacatttttaaatctgaagatcccgtgatcgatgacatgctgatagagtcagcttatcga
atacagtacgaaacattgcggcaagatttgattgctactcaagaagaagttgctagattg
aaacgtcagttgcaggaacgtgattatgccgaaagaaagaaagggagaagcggaacagtt
gaagttggaacaaaaattgaaaagcactgttcaagacgtgaaaaccaaaaactcagcaac
gaattggtcaaactgttattaatacttgaattcatgtttacggtacaatattcgtgtctt
tcgaattccgctacatttcgcaagaataatatcgatatggtttacggtacgctgaataat
ttagtcagagcatccaaagactgtgttacagaattggaacgccatgtgtcacaagtttta
tatgatttgaagcattcacaagatttgcagtattacgtgaaagaagatttgacttttgta
tctgccaaagaaattgacgttggtaacagggcggttatcatcgtctttgtaccctttcca
cagtataagcagtatagacgaattttggttcggttaattcatgaagtggaaaaaaaattt
ggcggaaagcatgttgtttttgttgcaaaacgtcgaattcttcctaaaccaacccgtggt
aaacgcaaaattactcaaaagcaaaaacgtcctcgcagccgtactttggctgctgtgcat
gatgaatatttgaacgatatagtgtttccggctgaaatagttggtaaacgtattcgagta
cgtttggacggcagtcggttgttgaaagttcacctcgatcgtaatcagaaggccgccgtt
gagcataaagtaaacagaatggagaaagaacaaagcggtcggttggagaacgtgcgatta
tatcagaaagagctgttagagtgtgccaaaaaggaaaatgtgatcgtcacgcttggaaca
ggcaccggcaaaacgttcattgctgtaatgttgattcgagaaatgtccgaatccgttcac
cagccgctgaaagaaggcggcaagagatcgttgtttattgtggacaaagttccactggtc
aaacaacaagccgagcatattcgaatcaataccaacctgaaagttggtgaattccacggc
gctttgggagtcgattgttggtcagccaagatttggatggaatttttcgacaagtttcat
gtgctcgtcatgacggctgaaattttccgaaacatcctgacccatggatttatcaaattt
gatattgtcaacttgatcgtcttcgatgagtgccatcacgctacaaagcaacatccttac
aaaaaaataatggaactttacaagttgtgttataataataacgacagtggaatacagccc
agaatattgggtttgacggcgtcggttatgaataaaaaaggagacgaaatcggcttgcag
aaggcgattcgcaatttggagacaacgttgtgcagtcgtgttgttggcacatcgcatgcg
gaattgttgaagctttactcggccgatcctcatatagcgatcgttgcatgcaaaaacgac
aacaagtacgattggcacgagttggatttgttttttcagcatctggtgcggagcacgcag
aaatctttggaacggtgcggccgcgaatgcgaaggcaacgtctccttgtacatccagcac
gtctgcgacgtgcttgccaagctggactcgatcatggggcagcttggaccgtggtgcgct
ttgcaagtttgcaagcaaatgctacaaagcacgacgaatttagcaactcgcatctcgact
ttgcttgctgacgacgaggacaataatctgttttcgctgttcacgtcgggatcggatgcc
agcagctcggtttggcttgaagtgttgaaaacttgcctgaaagtgaccagcgtcaaattg
aaacggcatattggtttggtcgactcggtccagaagctgaagtgtgtgttcattcgtcaa
caatttgttgaccagcaacagcaagccgtttggaattgtattcgtcaatcaacgcctggt
agcttattgtatagcggtgagttgaatttccaattggagaaaaataatagcagaaaattc
gaaaataccaatggagcaaatggcccaccctttcagatcctcatagacacggcgaagaaa
ctgcagccgcgttcgtatagttatctcgaggtcgattatgtcgtcggaagcaggatgtca
gccgaagttgcggaaccctccttcgcaagacaagaagaagtattaaaaaattttcgacat
ggaaagcttaatctacttgcagcaaccagtattttggaagaaggaatcgatgttcgtcat
tgcaattatgtcattcgctttgatacaccattgacttttcgatcttttgtccaatcaaaa
ggcagagctcgacagaagattgcttattatacaattttggttcaggacagatttttggag
agttttcaagaaatgttgaattcatttgtggaaacggaaaaatttttgaaggtgaatgga
cgtgatttaaatattctaacgagaactaaagatagagatcgttcttatagcggaaataat
gatcaagtcgacaattgccgtaaagaagtgaacttaccaaatggcgatgttgattcatta
gtagaaccttattatacttattttgaagagaatggccttgtaaagaaggcggcttgctta
gtactcagctctgctcataatgtgattaagcgttattgcaataaattacgtaaagacaga
ttcgctgatagtagtccaaagttcagtgtacagacaattctgaataaggatttgtcaata
tcgtatgttgccactgttcagttgccgacaacttcacctttaaaaaagaaaattgaagga
aaaccaatgcagaatgcaaaactagctgaaatggccgctgcattcgaaactgccaagatg
ttgcatgcgatgggtgaattgaatgaatttttgataccgccggtgactgtccgtaaagaa
attgaattgaaagaagatgaacagtttttttcgatcagcagtagaagctattatttgaaa
gaggtgcccgatgcgttatacaaagcaatacctagagcagatcagaagagttatctttat
gccataagtataagttctattgaaagttttttgccaaggctgggtatacttgtatcgaaa
ccgattggaaatcttcctggattttcagttttcacagacgagagttatattgatgtagaa
attgaatttgtcgaagaaacatcctattccgctcatcagctggacattttgacttcattt
cattgttgtattttcaaaaattatttgttcagagaagaagaggatttcatttttgatcca
gaaaatgccgcctgttcctatttgattgttccgttaaaatgcgaatataattcaaagtgc
agtgtggatttgtctactgccgaaaaaattatcaactggagcaaggatgtttctcacata
ccgcagcagagaagtgaaaaatttataatgaattctagcagttattttaatgcagtagtt
tatccttggtataagaataaaaacgatcgtgatttttattatttcgtcactgcagtcgac
aacacttgcacgccgatgtcgcctttcccgttaaaaatgtacagatcgtttgctgaatat
ttcgaagttacgaaacaggtgaaagtgttggacaaaaatcaacccttgctcagtgtcaag
atggtttcttttaaaaggctgaatcttttgtgcgaaaagccaatttccattctgctgttt
gatttcgacgacgacgccaactcttgtcattgcaaactggtacccgaattggtaataata
catccaatgccggcatcgatgtggcgttgtctgatatttctaccaactgtactttaccga
atgaatcatctgctcattgctgaacagcttcgacttcagattcttcgcgaagctatgttt
cccggagaagtgttggaggaaaattgcgaaatacagccgttgaataaagactggtatttg
ctagcatcccggttgaacgacatgtgcattgtggacaatcagttgccggtgaaattaagc
aagttgagcgtgaacagcaacagtgccgcagcagcaacagcaactggtagcattgatccc
gaaacccaggcactgttggaagagttcgatgtgcgattttgcaatgcatgtccgacagta
ccagtggacgatcagttggacattttaactggtaattctgtggccgaatctcatacagct
gaatcgaatgacgaatgtttatttgatacacacttttccctgcaattgttgtcatcaata
caaccgcagcagcagccgttggagaaagtggactttggaattgtcgaatcagacggtgaa
agtgattttttcgtcgccgccccggcattgcctgaatccgagttgaatttgtttgtcgaa
ccgtcggacgtttcggacacggcgacggctccggcccaacaccggcctggaccgcagtgt
cgggatgtgttgagggcgttgacgttgagaaaggcccaggatatgttcgacttggaatcg
atggaagcgttgggcgattcgtttttgaaattcatcgtcagcttgcacgttttcataaag
gagacgaactggaacgagggtcgactgacgtcgttgcgttccgaaatcgtcagcaacacc
aacctgttcaaccttggcaagcagaagctgctgcaagccaaactgaccgcggtaccgttc
gatccgaccgcccagtggctgcctccgtgttttcgaagcttggccgctttggaaagtgga
tacgaatccgtgaacgagctgattgatgaaggcgattcgaaaaagaagaatgaggcattg
aaagccaatacgccgacaccagttgttgttgctgaacgttacgaaatgtgctctttgaat
cgcactcatcaagtgatctacgacaagagcattgctgattgtgtcgaagcgttggtcggc
tgttatttgttggaagccggcatgcgaccggcgatcaagttgctcaaatggtttggcatc
gacatcgatggcaatctgatgaatttactttcttcttcttcttcttcttcttcttcttct
tccactgctttttgctcagaaaattgtgtgctgatcggtcctgaggcgaaaatccattca
atatggacagcgtacgatttgaactcttttgaggcgaaaatcggctatcggttcaccaac
aaggcctacttgattcaagcgttaacccacagctcgtacaacgaagtcgaaacgccagtg
accgacagttacgagcgtcttgaatttctgggcgacgcgattctcgactacttgatcagc
aggcacttgtacagcagcaagcgtatacgatcacctggcctgctgtccgatttgagagcg
gcacttgtgaacaactatttcttatatttcaatgctgagttgctcagtgtgaatgaacgg
ttcgtcttggctatgagaggactgaaagaaagtgtcaactttcacaatgaactttacatg
atggaagaagaacaagacgatgatgaaaaagaaaccagtgaatttgccgaacatgtagaa
gttccgaaaccgttgggtgatattttcgaatcagtagcaggagcgatttttctcgattct
cattgcagtttagcgaccgtctggcaagtctactacaacatgattgcagaagaaattggt
aaacaacggagcgacttcacttcatttaacaaatgcttatgtcatccaccgatatcacca
gttcgacatttactggaattagaaccggaacgtgtccaattcaacattttggacagagaa
gaaggaaacagcggcgtgcatgttcaggtcgttgttactggaaaaggaagttttattggt
agtggaaaaagttatcgaaccgcaaaacatgctgcggcgaaaaaagcagtgcgcgagttg
tatcccacttcgaatcattttattatttga
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integrated database retrieval system
