Trichinella spiralis: Tsp_01296
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Entry
Tsp_01296 CDS
T01609
Name
(RefSeq) chromatin-remodeling complex ATPase chain Iswi
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
tsp
Trichinella spiralis
Pathway
tsp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
Tsp_01296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsp03021
]
Tsp_01296
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_01296
Transcription machinery [BR:
tsp03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
Tsp_01296
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
Tsp_01296
RSF complex
Tsp_01296
WICH complex
Tsp_01296
B-WICH complex
Tsp_01296
NORC complex
Tsp_01296
BRF complex
Tsp_01296
NuRF complex (fruit fly)
Tsp_01296
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
DBINO
HDA2-3
Myb_DNA-binding
SWI2_SNF2
CHDII_SANT-like
AAA_14
DNA_pol3_gamma_R_C
Motif
Other DBs
NCBI-GeneID:
10911098
NCBI-ProteinID:
XP_003377094
LinkDB
All DBs
Position
Unknown
AA seq
1075 aa
AA seq
DB search
MFKLKMPISNKMENFNYSIVYFILFIYVNCINKLEKMVSEDDMEVDDGPPMLDREDYSEP
SSSRRQSESEEEDYLDVKSSKIAKVARPDTGDHYDQVLNDQAKRFEYLLKQTEVYSHFVS
SGALTEGKKLGSPLKIKEKKDGKVIPKVSAVGDHRHRKTEKEEDEELLEEEHIKGGEMRD
YQIRGLNWMIALLENGINGILADEMGLGKTLQTISFIGYLKHYKNMPSPHLVICPKSTLP
NWVNEFNRWCPSIVVVQLIGDQETRDAIINEKLMPGKWDVCVTSYEMAIREKCVLRKFNW
RYIVIDEAHRIKNEKSKLSEIVRQFRSSHRLLLTGTPLQNNLHELWALLNFLLPDVFNSS
DDFDAWFNTSSCFGDTGLVERLHTVLKPFLLRRLKSEVEKALPPKKELKIYIGLSKLQRD
WFVIFCSFSFCMYTKILMKDIDIVNGAGKLEKARLLNILMQLRKCCNHPYLFDGAEPGPP
FTTDQHLVDNCGKMVLVDKLLPKLKEQGSRVLIFSQMSRMLDILEDYCLWKQYPYCRLDG
QTPHQERQASIDAFNAPNSEKFIFMLTTRAGGLGINLATADIVILYDSDWNPQMDLQAMD
RAHRIGQKKTVRVFRLITENTVEERIVERAEIKLRLDTVVIQQGRLAETQKSLGKDEMLT
MIRHGADHVFAGKESEITEEDIDCILARSEEKNEALKRRLEELGESSLRNFTLDTQEASS
VYQFEGKDYRGKQRKALGYWIEPPKRERKANYQIDAYFRDALRPHVEPKAPKAPRPPKQP
QIQDFHFYPPRLLHLCEREVYYYRKTIGYKVPLMQDLPPEEALKRQEDEQKKIDEAVPLT
EEELAEKEQLLHCGFSNWSRREFNQFIKANEKYGRNDVENIAQEVDGKSPDEVREFYKVF
WARCCELADIDRVLGQIERGEARIQKRLSVKRALESKIARYRAPFHQLRVQYGTNKGKNY
TEEEDRFLVCMLHEIGFGKENLYEELRQAIRVAPQFRFDWFLKSRTAMELQRRCNTLISL
IEKEMHDVEQNDKSSGGGRNRNNCKSGRSGSSAATPEKRKTDVQDGKRSSRRSKA
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaattaaagatgcctataagcaataaaatggaaaattttaactatagtatagta
tattttattttatttatatatgtaaactgcattaataagctagagaaaatggttagcgag
gatgatatggaagtcgatgatggtcctcctatgcttgatagagaagattattcagagccg
tcttcatctcgccgtcaaagtgaaagcgaggaagaagattatttggatgttaagagctct
aagatcgcaaaagttgctagaccggatactggagatcattacgatcaagtattgaatgat
caggcaaagcgttttgaatatctgttgaaacagacagaagtgtattcacattttgtgtct
agcggcgcgttgactgaagggaagaaacttggttctcctttgaaaattaaagaaaagaaa
gacggtaaagtgattccgaaggtttcagctgttggcgatcaccgacatcgcaaaactgaa
aaagaagaggatgaggaattgttagaagaggaacatatcaaaggaggtgaaatgcgagat
tatcaaattcgcggtttaaactggatgattgctttattagagaatgggatcaatggtatt
ttagccgatgaaatgggcttgggcaaaactcttcaaactatttcctttattggttatttg
aagcattataaaaacatgccgagtccgcatttggtaatttgtccaaagtcaacattgccc
aactgggtgaatgaattcaatcgttggtgcccgtctattgttgtcgttcagttgattggt
gatcaggaaactcgagatgctattattaatgaaaaactcatgcctggcaaatgggatgtg
tgcgttacgagttatgagatggctattcgcgaaaagtgcgttctgcggaaattcaactgg
cgatacattgttattgacgaagcccacagaattaaaaatgaaaagtcaaaactgtcagag
attgttcgtcagtttagatcttcgcatcgattacttttaactggaactcctctgcagaat
aatttgcatgaactgtgggccttattaaattttttgttgccagatgttttcaacagctcg
gatgattttgacgcttggtttaacacgagttcatgttttggtgatactggactcgtggag
cggttgcacaccgttctgaaaccgtttttacttcgacgtttgaaatctgaagtagagaaa
gcgcttcctccgaaaaaggagctaaaaatttacattggcttgtcgaagcttcagcgagat
tggtttgttattttttgcagtttttcattttgcatgtatacaaaaattctaatgaaagat
attgatattgttaacggagcaggcaaattagaaaaggctcgtttgttgaacattcttatg
caactaagaaaatgttgcaatcatccttacttattcgatggtgcggaaccgggaccgcca
tttactactgatcaacatttggtagataattgtggcaaaatggttcttgtcgacaagctt
ttgcctaaattgaaagaacaaggttcgagagttttgattttttcgcagatgtccagaatg
cttgatattttggaagattactgcttgtggaagcagtatccgtattgtcgcttggacgga
caaactccacatcaagagcgacaagcctcaattgatgctttcaatgccccgaacagcgaa
aagtttatttttatgctaaccacgcgtgctggcggtcttggcattaatttggcaacagca
gatattgttatattgtatgattcagattggaatcctcagatggatcttcaggcgatggat
cgagctcatcgaattggtcagaaaaagactgttcgagtgtttcgattgatcaccgaaaat
actgtcgaagagcggattgtggaacgtgcagaaataaaactgcgcttggacactgtggta
attcagcaagggcggctggccgaaactcaaaaatctcttggaaaagacgagatgttgacc
atgattcggcatggtgcggatcatgtgtttgcaggaaaggagtcggaaattaccgaagaa
gatattgactgcattttggcgagatccgaagaaaagaatgaagctttgaagcgtcgttta
gaagaactgggagaaagttctttgcgaaacttcactttggacacgcaagaagcttcttcg
gtgtatcaatttgaagggaaagattatagaggcaaacagcgaaaagctcttggctattgg
attgagcctccgaaaagagaacgcaaagcgaattatcaaatcgatgcttatttcagagat
gcactccgtccacatgtggaaccaaaagcacccaaagctccaaggccaccaaagcaaccg
cagatacaagattttcacttctatccacctcgtttgttgcatctctgtgaaagagaagtc
tattattatcgaaagactatcggttataaggttcccctgatgcaagatcttccacctgaa
gaagctttgaaacggcaagaagatgaacaaaagaaaattgatgaagctgtaccactgaca
gaagaagaattggctgaaaaggagcagttgttgcattgtggatttagcaactggtctcgg
cgggaatttaatcagtttatcaaggcgaatgaaaaatacggccgtaacgatgttgaaaat
attgcccaagaagtggatggcaaatctcctgatgaggttcgagaattttacaaagtattt
tgggctcgttgttgtgaactggcggatattgaccgtgttttgggtcaaattgaaagagga
gaagctcgaattcagaagcgtctcagtgtgaaacgtgcgttggagtcgaaaattgcacga
tacagagcaccgttccatcagctgcgtgtacagtacggtacaaataaggggaaaaattat
accgaagaagaagacagatttttggtttgcatgttacacgagattggctttggaaaggaa
aatttgtatgaagaattgcgacaagcaatccgagtggcaccacagtttcgatttgactgg
tttttgaaatctcgaacagctatggagttgcaacgacgatgtaacactttgataagctta
attgaaaaagaaatgcacgacgttgagcaaaacgacaaaagcagtggcggaggacgaaat
cgaaacaattgcaaatctggacgaagtggttcgtcagcagctacccctgaaaaacgcaaa
actgatgtacaagatggaaaaagaagcagtcgtagatcgaaggcttaa
DBGET
integrated database retrieval system
