Trichinella spiralis: Tsp_01403
Help
Entry
Tsp_01403 CDS
T01609
Name
(RefSeq) Pre-mRNA-processing factor 40
KO
K12821
pre-mRNA-processing factor 40
Organism
tsp
Trichinella spiralis
Pathway
tsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tsp_01403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_01403
Spliceosome [BR:
tsp03041
]
Complex A
U1 snRNP components
U1 related factors
Tsp_01403
Complex B
Tsp_01403
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF5050
Apocytochr_F_N
Motif
Other DBs
NCBI-GeneID:
10911333
NCBI-ProteinID:
XP_003377247
UniProt:
E5SCD3
LinkDB
All DBs
Position
Unknown
AA seq
742 aa
AA seq
DB search
MDPARPPGQYGGTSFLPPTITFSQLNANQTVTSFSMPPNSATPSAGWRPVTPVQFLNHIN
TSVTPSVPVNIHSSVCTTANSVLDGSSTVKCCLLFRSSIQESIWSEHRAPDGRYFYYNRE
TKQSSWIKPNELKSHTELLLDQCPWQEYKTPDGKVYYHNRDTKESIWTIPHELDELKTEI
QLIFVNFLELVEAEQLLKESKPQSDIERAMQATLESIAMHGPMLGADSEKSTEKSVEEMY
KDKKEAADAFRELLKDKKIQCNASWEQTMRIIQGDPRYRAIPKLQEKKQIFNAYKVQRAK
EEKEEMRQRQRKSKEDLEKWLQENDKVTPTMRYRRAEELFKDERVWNAVPEMERRDIFKD
VQFYLDKKEKEEARVLRKKNIRALAAILAGMPEVTVETTWREGRKLLAENAAFLNDESLQ
NMDKEDALIVWEEHIRGLEAEEKAEKEAEALREKRQCRKRREAFQQMLDEMYKMGVLNCH
SLWRVLYPTFAKDPRFTEMLGQPGSTPLDLFKFYVINLKERFDSDKRILKTILKEKKFNV
EVETAYEEFLKQVQDDTRTADIAVCNLKQCFEVLVERAKLKEKDRMKEDLRRKKALQDSF
TEIFRKLVPPLEPTSTWEQVRPLVCEDPDFQILTEEEDRISAFNDFIEYLSVSCSHHHHS
HGKKKKKTKRVSPRDDAHDRVSRKKKKKEKSTSSDEEFEKKRKRKAEKDASHMSSDAESG
EISEGELERKRRRILKELKKQA
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggatccggctcgtcctcctggtcaatatggaggaacttcatttcttccgccgactatt
accttttcgcagctgaatgccaatcaaacagtgacatcattttcgatgccgccaaactca
gctacaccttctgcaggttggcgaccagtgactcctgttcaatttttgaatcatattaat
acatctgtcacgcccagcgttccagtcaacattcattcttcagtctgtacaaccgctaac
agtgttctcgacggttcttcaacggtaaagtgttgtttactgtttcgctcatccatacag
gaaagcatttggtctgaacatcgagcacctgacggcagatatttttattacaacagagaa
acgaaacaatcgtcctggattaaaccgaatgaattgaagagccacactgaactgttgctc
gatcagtgtccatggcaagagtacaaaacaccggatggtaaagtttattatcacaaccgt
gatacgaaagaatccatatggacgattcctcacgaattggatgaattgaaaactgaaata
cagcttatatttgtaaattttttagaactcgtcgaagcagaacaattgctaaaagaatcc
aaaccacagagtgatattgaacgcgcaatgcaagctacgctggaatcaattgcaatgcat
gggccaatgcttggcgctgactcggaaaaatccacggagaagtcagtcgaagagatgtat
aaagacaaaaaagaggcagccgatgcttttagagaacttttgaaagacaaaaaaattcaa
tgcaacgcatcttgggagcagacgatgcgcattattcagggggatccgcggtatcgagct
attccaaagttgcaggagaagaagcaaatattcaacgcttacaaagtgcaacgagctaaa
gaagagaaagaagaaatgcgtcaacggcagaggaaatctaaggaagatttagaaaagtgg
ttgcaagagaatgacaaagttacgccaacaatgcgttatcgtcgagcggaagagctgttc
aaagatgagcgagtttggaatgcggttcctgaaatggagcggcgagacatcttcaaagat
gttcagttctatttggataaaaaggaaaaagaagaagccagggttcttagaaagaaaaat
atccgggccttggcggccattctagccggcatgccggaagtgacagtagaaactacttgg
cgtgaaggtcgaaagcttcttgcagagaatgctgcttttttgaacgacgagagtcttcaa
aatatggataaagaggatgcgttgattgtttgggaggagcacatacgaggtctggaggcg
gaagaaaaggcagaaaaagaggccgaagcacttcgtgaaaagcgtcagtgtcgtaaaaga
cgcgaagcattccaacaaatgttggacgagatgtacaaaatgggtgtgttgaattgtcat
tcactttggcgtgttctttatcccacgtttgccaaagatccacggttcacggagatgctg
ggccagccaggttctaccccgctggatttgttcaaattttatgtgataaatttgaaagaa
cgattcgatagtgacaaacggatacttaaaactattttaaaggagaaaaagttcaacgta
gaagtagaaacagcttatgaagaatttttgaagcaagtgcaagatgacactcgaacggct
gatattgcagtatgcaatttgaaacaatgtttcgaagtgcttgtggagagagcaaaattg
aaagagaaagatcgcatgaaagaagatttacgacgcaaaaaagcattgcaagactcattt
actgagatatttcgcaagctagttccgccattggaaccaacttccacttgggaacaggtt
cgaccactggtatgcgaggatccagattttcaaattcttacagaagaggaggatcgtatc
agtgcttttaatgatttcattgaatatttatcggtttcttgttctcatcatcatcactct
catgggaaaaagaaaaagaagaccaaaagggtttctccaagagatgacgctcatgacagg
gtttctagaaagaaaaagaagaaagagaaatctacttcatctgatgaagaatttgagaag
aaacgaaagagaaaagctgaaaaagatgcctctcacatgtcaagcgacgcggaaagtggt
gaaatcagtgaaggagagttggaaaggaaacgtagacgtatattgaaagagttgaagaag
caagcataa
DBGET
integrated database retrieval system
