Trichinella spiralis: Tsp_01416
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Entry
Tsp_01416 CDS
T01609
Name
(RefSeq) cytoplasmic FMR1-interacting protein
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_01416
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
Tsp_01416
Factors involved in mRNA localization
Other mRNA localization factors
Tsp_01416
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
Motif
Other DBs
NCBI-GeneID:
10911320
NCBI-ProteinID:
XP_003377234
LinkDB
All DBs
Position
Unknown
AA seq
1257 aa
AA seq
DB search
MTNPKKVLRVNNTAKSECTEYTVFTIESDDTVQTHDMSGEVVSFADAIGNVELLDEIPLP
DCQPVVEALPQTLRYRANFDANFEDRSAFITGISKYIEEATRHAELNEILLEGERHAINL
YTWRCCSRAVPMAKSNEQPNRAEIYDKIVEVLQPEDRATKRFCEEVKRLSHSEKRKDFVS
EAYLLSLGKLINMFAVLDELKNMKASIKNDYSTYRRAAQFLQVMSDSQTLQESQNLSMFL
ATQNKIKDSLRSQLQAIEGYDELLADVINICMHFYENHLYVTPAEKHMLIKQLEVVPLFG
DMQVMPFAFIKRCASYEASRWPLASVESTHCPINIVELLRTFREEHDEFVTRLARIHNKI
AVYDKNVVRSVDENRHLTELALQGLQLLSSWTSTVLELYSWKLLHPTDPHQSADCPPTAE
EYERATRYNYSSDEKFAIIEIISMVKGLQSLMGKMEAEFQLAIRKSVYYDTQEFVQITLR
EPLRKATKNKKELIRTILQSVRDTVIDSSNAPELYEDIYGTRSRRDTGSNSVEFHIEPRA
VPPSSTQLYMMRTMLESLVSDRSSGRKTIRKDIDGQHLSIISEFLRNSHYWNALLNFNEM
LSMCCDMSQLWFREFYLEMTMGQRIQFPIEMSMPWILTDHILQTKNPSYIECILYQLDLY
NDSAECAMTRFEKQFLYDEVEAEVNLCFDQFVYRLSVQIFSHYKQLAASMLLDKRFKSDC
SMHGVNVPFVFSTRYETLMKQRHFQLLGRSIDLNRLLTQRINAFFLKSLDLAINRFEATA
LTGIVELDGLIHVNRLCHKLLKNHLQGLTDFDDLYQEANHSISAPYGRITLHVFWELNYD
FLTNYCYNGSTNRFVRSRASSNSASAAQRDKPPQASAYFFWGSKAFNTAFSNIYTMYCGF
VGVPHFHAMAKLLKYNGIAVILEELLKVSENLLQNSLLQPLKSVAKLIPKVCRLPLYDYG
SPGVLAFYYAQLKNLIHNNDLKMEIFQACREMGNLMLFCLWLEKSLSQEEVSDLLHAAPF
QNIIPRPYCKVHILLEIENEKPEMKIKRLEQKYANLHVSNIMERYGSEKQASIAQDCDLL
TKERLCCGLSIFEVILMRIKSFLTDPIWSGSMLPANSVMTIDECSEFHRLWSALQFLYCM
PPRENEITVEELFGEGLNWCGCALIVLLDQRRRFEIVDFCYHILRVQRVDGCDDIVPGVG
QLTRMVERIRVFQILNGCIFGVICKYLRFGDFNDTVPAERIKYFQPPLKQAVISSLQ
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaccccaaaaaggtgctacgtgtgaacaatacggcaaaaagtgaatgcactgaa
tatactgtatttacaattgaaagtgatgatacagttcaaacgcatgacatgtctggagag
gtagtatcatttgcggatgcgataggcaatgttgaattgctggatgaaattcctcttccg
gattgtcaaccagttgttgaagcattgccacaaactttgcgttacagagcaaattttgat
gctaactttgaagatcgatctgcgttcataaccggtatatctaaatatattgaagaagcg
acaagacacgctgaacttaatgaaattctattagaaggggaacgtcatgctattaatcta
tacacttggcgttgttgttcacgagctgtaccgatggcaaaatcaaatgaacaaccaaat
cgtgctgaaatttatgacaaaattgtggaagttcttcaacctgaagatcgcgctacgaaa
cgtttctgtgaagaggtgaaaagattgagccattcagaaaaacgaaaagattttgttagt
gaagcctatttgctttctctgggaaaattgatcaacatgtttgctgtattggacgaactt
aaaaatatgaaagcgtctataaaaaatgattattctacatataggagagctgcacaattt
ctacaggttatgtctgacagtcaaactttacaagagtctcagaatttgtcaatgtttttg
gctactcagaataaaatcaaagacagtcttaggagtcaacttcaagcaattgaaggttat
gacgaactgctggctgacgtgatcaacatttgcatgcatttttatgaaaatcatttatat
gtgacaccagcggagaagcacatgcttatcaaacaactcgaagttgttccactgtttggg
gatatgcaagtgatgccgtttgctttcatcaaacgatgcgcatcttatgaagcatccaga
tggccattggccagtgtggaatcgacccactgtccaataaacattgttgaattgttgcgc
acttttcgcgaagagcacgacgaattcgtcactcgattggctcgaattcacaacaaaatt
gcagtttatgacaagaatgttgttagaagtgttgatgaaaatcgtcatttgactgaactg
gcactgcaaggcttgcaattattgtccagttggacgtcgactgttttagaattgtattct
tggaaattgcttcatccaactgatcctcatcaaagtgccgattgtccaccaactgctgaa
gaatatgaaagagcaactcgatacaattattcttccgacgaaaagtttgccattattgaa
ataatttccatggtaaagggactgcaatctctgatgggaaaaatggaagccgaatttcag
ttagctataaggaaatctgtctactatgatactcaggaatttgtgcaaattactctgcga
gaaccgctacgaaaggcgacgaaaaataaaaaagaactaatacgaactattttgcaatct
gtcagagatacagttattgattcgtcaaatgcaccggaattgtatgaagatatatacggc
acacgttcacggcgtgatacgggaagcaattctgtggaatttcacattgaaccacgtgcc
gttccaccatcttctacgcagctttacatgatgagaacaatgcttgaatcattggtatca
gataggagcagcggtcgcaaaacgattcgtaaagatattgatggtcaacacttgagtata
atttcggaatttttgcgcaattcacactactggaacgcgttgcttaattttaatgaaatg
ttaagcatgtgttgcgacatgtcgcagttgtggttccgagagttctacttagaaatgacc
atgggtcaacgtattcaatttccaatagagatgtccatgccgtggattttgactgatcat
attttgcagacgaaaaatccatcttatatcgaatgcattctttatcagttggatctttac
aacgacagtgcagaatgtgcgatgacgagatttgagaagcaatttttgtatgatgaagtt
gaagcagaagtgaatctctgtttcgatcagtttgtttatcgcttgtctgtgcaaatattt
tctcattacaagcagcttgctgctagcatgctattggacaagcgattcaaatctgactgc
agcatgcatggagtcaacgtgcctttcgtattcagcacacgttatgaaacgttaatgaag
caaaggcattttcaacttcttggtagatcgattgatttgaatcgactgttgacacaacga
ataaacgcattttttcttaaatcgctcgatttggctattaacagatttgaagccacggct
ttgactggcattgtggaattggacggtttgattcacgtgaaccgactgtgtcataaattg
ctgaaaaatcacttgcaaggtttgacagattttgatgatttatatcaagaagcaaatcac
agcatatcggctccgtatggtcgtattacgttgcacgttttctgggaattgaattacgat
tttctgacaaattattgctacaatggatccactaatcgatttgtacgaagcagggcttcg
tcaaattctgcttctgctgcccaacgtgacaaaccaccgcaagcttcagcttactttttt
tggggaagcaaggcatttaatacagcattcagcaacatatatacaatgtattgtggtttt
gttggcgtgccgcattttcacgcaatggctaagctgctcaaatacaatggcatagcagtt
attttagaagaattgctcaaagtgagcgaaaatttgcttcaaaattctcttcttcaaccg
ttgaagagtgtggctaagctgattcccaaagtgtgtcgcttgcctttgtacgattacggt
tctccaggcgtactagcattttattatgctcagttgaaaaatttaattcacaataatgac
ttaaaaatggaaatattccaagcctgtcgtgaaatgggtaatttgatgttgttctgtctg
tggctagaaaaatcacttagtcaagaggaagtgtccgatttgcttcatgcggctcctttt
caaaatattattcctagaccgtattgtaaagttcatattcttctggaaatagaaaatgag
aaaccggaaatgaagattaaacgattagaacaaaaatatgcaaatttgcatgtttcgaat
ataatggaacgttatggttcagaaaagcaagcatccattgctcaggactgcgatttgttg
accaaagagcgtctttgctgcggtttgtccatattcgaggtaatattgatgcgcataaag
agttttcttactgatccaatatggtctggctccatgttgccagccaattctgtaatgaca
atcgacgaatgtagtgaatttcatcgtctctggtcagctttgcagtttttgtactgcatg
ccaccacgtgaaaatgaaattactgtcgaggaattgtttggtgaagggttgaattggtgt
ggttgtgcattaattgttttgcttgatcagaggagacgattcgaaattgtcgacttttgc
tatcacatactccgtgtgcaaagagtggatggctgtgatgacattgttcctggcgttggt
cagctaacacgaatggttgaacgaataagagtgtttcagattttgaatggatgcattttt
ggggtcatttgtaaatatttacgatttggcgacttcaacgacactgtaccagccgaacgg
ataaaatactttcaaccgcctttgaaacaagcagtgatctcttccttgcaatga
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