Trichinella spiralis: Tsp_01537
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Entry
Tsp_01537 CDS
T01609
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tsp
Trichinella spiralis
Pathway
tsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Tsp_01537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsp03021
]
Tsp_01537
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_01537
Transcription machinery [BR:
tsp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Tsp_01537
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
Tsp_01537
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_C
zf_PCFS4
VHS
Motif
Other DBs
NCBI-GeneID:
10911598
NCBI-ProteinID:
XP_003377349
LinkDB
All DBs
Position
Unknown
AA seq
1156 aa
AA seq
DB search
MTTEEDVISDYYTSLQELECNSKPHINMLTMLAEESQRFAPKIVQLVESHIQKVTTNQKL
PVLYLIDSIVKNCPDTQYKELFSKNLINIFVHVFDQVDEKTRQALYRLRTTWPNIFPASK
LYGIDIKVHEIDPAWPLQNPNQLKASAANVKGQKVSEQQEISEGMVVSSEGQITAEKVRC
EELVRLKEELQKTRENMIASVGGPLRINKKPVDLSVRDVENKEKLSSKERVSLKDNPMLR
STSKTSAPFLSSKENENFVESDCCSVESFQSISSYVVCDEHDSLSPHSQLPSESPDQTFI
SVDEEEAGESSDDPIVVVDIVEMDDEPPSKVQSQTVNKQSNDEKLPNQLSTRNTEYSKKS
LHDTKNFSSSRRSSERRDRRRHTRSPDYSPRSSVEKRSRHSHRSRQIDRDGRGRRFSRDE
RSRSPLLSPVGRRRRSPPSVKKGGSSSAMLSSSDVRESGRLHGDSKKSRLHNEDTSLPMP
VAKKERPYKPPPVPVDLEEPKAPLSNSVNPMDGMEYRSRSPGPLVTPMTTPVNSALENRA
IIFQRAQKQLADGILNQREYDDLIRDLTDVIGRVRPPDAPMNSVRSMIVGDVWNPEVSVN
SKTLGSAGRLVTPIQAPASTSGVSLLALPEQECKAPPMSIEIDLSESKTGGPSNDRIFVD
GHGYEVRYVDEVAVIERNGLPHRISFTGCAKEVIVDGIAYNLAFGESRVITLDGQPVVIR
FGAPARELYFGNVPLRGIFGGPPIFIKVNGVKHSILLGGPPPEVKIDTEPSYELLRFLHS
GHMGRRGMMRQDVRASLNIGKRLQNNNRCEPVAANIEIPKPPPAVVAHVNTGAISNTSSN
SSVSVNVGGGGGAAGATAPSQMTPDAIRALLNRIKQVGLLPDNPHSVKPSTVASAAAAMP
MPVTTWFPDDETVERRKEPTTELKTFNMKYLKITCGMRFAVGDSQKYSKHLDWHFKMNRR
EKAGITASSRPWYLASEVCFVIFFFHVVVRFTNDSVIRIGSITKNLEKIYRRKICQVCNE
TFEQFWDGDEEVWKLRNAMLVDGKVYHPLCYQDAGIESASSSFSNTALTFLEEKKTVIGT
TGTETEKGEVKLMKEVVVKLEEQSKSLQSARSTTIKPTLPCENLVKSILTAIKGSSEEVV
GRTSAAAIAAEKVDQC
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggaagaggacgtcatttcggactactatacttccctccaagaattggaatgc
aacagcaagccacacatcaacatgttaacgatgttagctgaagaaagccagcgctttgct
ccaaaaattgtgcaacttgttgaatcgcatattcaaaaggttactactaatcaaaagctc
ccggttttgtatttaattgactcaattgtgaagaattgtccagacactcaatacaaagag
ttattttcaaaaaatttaataaacatttttgttcatgtatttgatcaggttgatgagaaa
acgcgtcaagcgttgtatcgtttacgaacaacgtggccgaatatttttcctgcatccaag
ctatacggcatagatataaaagtacacgaaatcgatcctgcttggccattacagaatcct
aatcagctgaaagcatcagctgccaatgttaaaggtcagaaagtttctgagcagcaagaa
atatcagaaggaatggttgtttcttcggagggacaaattactgctgagaaagtgcgctgt
gaagagttagtgcgattgaaagaagaattgcaaaaaacacgtgaaaatatgatagcttct
gttggggggcctttgagaattaataagaaaccggttgacttatctgtcagagacgtagaa
aataaggagaaattaagcagtaaagaaagagtatcattaaaggacaatccgatgttgcgt
tcgacatccaaaacgtcggcaccatttttgtcatcgaaggagaacgagaattttgttgag
tcagactgttgtagcgttgaaagctttcagtcgatttcttcatatgtagtttgtgatgaa
catgattcgctttcacctcattctcagttaccatctgaatcaccagatcagacgtttatt
tctgttgatgaagaagaagcaggtgaaagttctgacgatcccatagtggtggttgatata
gtagagatggatgatgagccaccgtcaaaagttcaaagtcagacagtgaacaaacagtca
aatgacgaaaagttgcctaaccagttgtcgactagaaacactgaatactcgaagaaatct
ttacatgatacgaaaaactttagtagctcaagacgtagcagtgaaagaagggatcgacgt
cgtcatactcgttccccagactattctcctcgatcaagtgttgaaaaacgttctaggcat
agtcatcggtcaaggcagattgatcgggatggtcgtggtagaagattttcacgtgacgaa
cgatcccgttcaccgctcttgtctccagttggacgtcgccgtaggtctccgcctagtgtg
aagaagggtggttcatcatcagcgatgttgagtagcagcgatgttcgagaatcagggcgt
ttgcatggcgattcgaaaaaatctcgattgcacaacgaagacacgtcgttgccgatgcct
gttgcaaagaaagaacgcccctacaaaccgccgcctgttcccgtcgatttggaagagccg
aaagcacctctttccaacagcgtgaatcccatggatggaatggagtatcgatcccgttcc
cctggtccgttggtgacgccaatgacgacgccagtaaacagcgctttagagaaccgagcg
ataattttccaaagagcccaaaagcaacttgccgatggaatcttgaatcagcgagaatat
gacgatttgattcgtgatctcactgatgtaattggccgtgttcggcctcctgacgcgcca
atgaattctgttagatcgatgattgttggcgatgtgtggaatccggaagtttcagttaat
agtaaaacgttgggcagtgctggtaggttagtgactccaattcaagcgccagcttcaact
tcaggggtcagtttgttagcattgccggaacaggagtgcaaggcgcctccgatgtcgata
gaaatcgaccttagtgaaagtaaaacaggcgggccgtcgaatgatcgtatattcgtcgac
gggcacggctacgaggtgcgctacgttgacgaggtagcagtaatcgagaggaacggtctt
cctcatcgaattagctttacgggatgcgcgaaggaagtgatcgtcgacggcattgcgtac
aatttggctttcggcgagtcgcgcgttattacactggacggtcagccagttgtgatacga
ttcggtgcgccggcacgggaattgtatttcggcaacgtgccgttgcgggggattttcggt
ggaccgccgattttcatcaaagtgaatggagtgaaacattccattctactcggtggccca
ccgccggaagtgaaaatcgacaccgaaccttcttacgaattgttgcgttttttgcactcg
ggtcacatgggcagacgtggtatgatgcgccaggatgtcagggcgtccttgaatattggc
aaacgattgcaaaacaacaatcgttgcgagcctgttgctgcaaacattgagataccaaag
cctccgccagcagtagtagcacacgtcaataccggcgccattagtaatactagcagtaat
agcagtgtttccgtcaatgttggcggtggtggtggtgccgccggtgccactgccccatcg
cagatgactcccgacgcaattagggcattattgaacaggataaaacaggtgggactttta
cccgacaatccgcattctgttaaaccgtcaacagtagcatcggcggcagctgcaatgcca
atgccagtaacaacttggtttccagacgatgagactgtcgaacgacgcaaagagccgacc
actgagttgaaaactttcaacatgaaatacttaaaaattacatgcggaatgcgttttgca
gttggcgatagtcaaaagtattccaaacatttggactggcattttaagatgaatcgcaga
gaaaaggccggcattactgcttcatccaggccgtggtatcttgcatctgaagtatgtttt
gtaattttcttcttccatgttgtcgtccgcttcacaaatgattctgtaattaggattgga
tcaattacgaagaatttggagaagatatatcgaagaaagatttgtcaagtttgcaatgag
acttttgaacaattctgggatggggatgaggaagtttggaaattgcgcaacgcgatgctt
gtagacggaaaggtctatcatccgttgtgttatcaagatgctggaatagaatcggcatca
tcttccttttcgaacactgcgcttacctttttggaagagaagaaaacagttattggtaca
acagggacagagacggagaaaggtgaagtgaaactgatgaaagaagtggtggtaaaattg
gaagagcagagtaaaagtttgcaatctgcacgctcaacgacgataaagccaacactgcct
tgcgaaaatttggtcaagtctattttgaccgctattaagggttcatccgaagaggtggtc
ggcaggacaagcgctgctgctattgctgctgaaaaggttgatcaatgctaa
DBGET
integrated database retrieval system
