Trichinella spiralis: Tsp_01598
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Entry
Tsp_01598 CDS
T01609
Name
(RefSeq) Pre-mRNA-splicing factor 8-like protein
KO
K12856
pre-mRNA-processing factor 8
Organism
tsp
Trichinella spiralis
Pathway
tsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tsp_01598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_01598
Spliceosome [BR:
tsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
Tsp_01598
Complex C
U5 SnRNP specific factors
Tsp_01598
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
DUF536
Motif
Other DBs
NCBI-GeneID:
10911656
NCBI-ProteinID:
XP_003377404
LinkDB
All DBs
Position
Unknown
AA seq
2317 aa
AA seq
DB search
MAVPPPGWNGPPPGMQNIPFAPGASVISHPTLAPNQFANAPRLTAEELEDKAKKWQQLQS
KRYAVKRKFGYTDTQKEEMPPEHVRKIIRDHGDMSSRKYRHDKRVYLGALKYMPHAVLKL
MENMPMPWEQMRDVKVLYHITGAITFVNEIPWVVEPVYIAQWGTMWIMMRREKRDRRHFK
RMRFPPFDDEEPPLDYADNILDVEPLEPIQMELDPEEDETVFKWFYDNKPLVGTKYVNGL
TYKKWNFTLPMMATLYRLANQLLTDLVDDNYFYLFDLKTFFTAKALNVAIPGGPKFEPLV
KDQNLQYHTPNVVFIKTEDPELPAFYFDPLINPILLRHTSKMTDPSFDDDEEDYKLPEGV
EALFSDVPLYTDHTANGIALLWAPRPYREHCPSAMPVKVRVSYQKLLKIYVLNALKHRPP
KPQKRRYLFRSFKSTKFFQVTTLDWVEAGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNL
KPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDSHVQYRLNNIDAYQLADGLQYIFAH
VGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGTVGKGPGCGFWAPGWRVWLFFLRGV
TPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHYDLELRAAVMHDIIDMMPEGIKQN
KARTILQHLSEAWRCWKANIPWKVPGLPTPVENMILRFVKAKADWWTNTAHYNRERIRRG
ATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYISPEEAVAVYTTTVHWLESRRFSP
IPFPPLSYKHDTKLLILALERLKEAYSVKNRLNQSQREELALIEQAYDNPHEALSRIKRH
MLTQRAFKEVGIEFMDLYSHLVPVHDIEPLEKVTDAYLDQYLWYEADKRRLFPQWIKPGD
SEPPPLLVYKWCQGINNLQDVWDTSNGECNVMLEAKFEKLYEKIDLTLLNRLLRLIVDHN
IADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFISQYYGLVLDLLLLGLRRASEIAGP
PQCPNDFLTFQDVATETAHPIRLYCRYVDRIWMFFKFTADDAKDLIQRYLTEHPDPNNEN
IVGYNNKKCWPRDSRMRLMKHDVNLGRAVFWDIKNRLPRSLTTVEWENSFVSVYSRDNPN
LLFDMAGFECRILPKCRMSHEDFSHRDGVWNLQNEVTKERTAQCFLKVDEESMNRFHNRV
RQILMASGSTTFTKIVNKWNTALIGLMTYYREAVVNTQELLDLLVKCENKIQTRIKIGLN
SKMPARFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWCKQTDAGGITHFRSGMSHDEDQ
LIPNLYRYIQPWEAEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLF
QKDRHTLAYDKGWRVRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEG
ILEHTLFKGTYFPTWEGLFWEKASGFEESMKFKKLTNAQRSGLNQIPNRRFTLWWSPTIN
RANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVCDQELDA
LEIETVQKETIHPRKSYKMNSSCADILLFAQYKWHVSRPSLLADSKDIMDNTTTQKYWID
VQLRWGDYDSHDIERYSRAKFLDYTTDNMSIYPSPTGTLIAVDLAYNLYSAYGNWFPGCK
PLIRQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLTSQNYGELFSNQIIWFVDDT
NVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAE
EVAALIRSLPVEEQPRQIIVTRKAMLDPLEVHLLDFPNIVIKGSELMLPFQACMKVEKFG
DLILKATEPQMVLFNLYDDWLKTISSYTVEFFLKLYTKRKDVLPSSSIDAVIAFSRLILM
LRALHINPDKTKVILKPDKTTITEAHHIWPSLADEEWIKVELALKDMILADYGKKNNVNV
ASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATATRTVNKHGDEIISTTT
SNYESLSFASRTEWRVRAISATNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFIIISD
LRTQIVGLLYGTSPADNPQVKEIRCVVMPPQWGTHQTVHIPNVFPEHEFLKDLEPLGWMH
TQPNELPQLSPQDITLHAKLMNENQNWDGEKTVVITCSFTPGSVSLTAYKLTPSGFEWGR
QNTDKGNNPKGYLPSHYEKVQMLLSDRFLGFFMVPVQTSWNYNFMGVRHDANMKYDVTLG
NPKEFYHEQHRPSHFLNFATIEDPEGIYSADRENLLA
NT seq
6954 nt
NT seq
+upstream
nt +downstream
nt
atggcagttccacctccgggatggaatggcccaccacctggtatgcaaaatattcctttt
gcaccaggtgcgtcggtgatttcacatccaacattagcgccgaatcagtttgcaaacgcg
ccgcgacttacggccgaagagcttgaagataaagcaaaaaaatggcaacagttgcagtca
aaacgttacgctgtaaaacgaaaatttggttacacagacactcagaaagaagaaatgcca
ccagaacatgttcgaaaaattatacgtgatcatggtgacatgagttcaagaaaatacaga
cacgacaagcgtgtttatttaggcgctttgaaatatatgccgcatgctgttttgaagctt
atggaaaatatgcctatgccgtgggagcagatgcgagatgtaaaggttttatatcatata
acaggggcaattacgtttgtcaatgaaataccgtgggtggttgaacctgtttacattgca
cagtggggaacaatgtggattatgatgcgtcgagaaaagcgagacaggcgtcattttaaa
agaatgcgctttccaccatttgacgatgaagagcctcctcttgattatgcagataacatt
ttggatgtggaacctctggagccaatccaaatggaactagatccagaagaagatgaaacc
gtgttcaagtggttctatgataacaaaccacttgttggaactaaatatgtgaatggactc
acgtacaaaaaatggaatttcacacttcctatgatggcgactctgtatcgacttgcaaat
caacttttaacggatttagtagatgataactacttctatctgttcgatttgaaaaccttt
ttcactgcgaaggcattgaatgttgctattccaggtggtccaaaatttgaacctttggtg
aaggatcagaatcttcagtatcacactccgaatgttgtgtttataaaaacagaggatcct
gaacttcctgcattttactttgatccattgataaatccaattttgcttcggcatacttct
aagatgactgacccatcctttgatgatgatgaggaagattataaattacctgaaggtgtg
gaggcgctattttctgacgttccactgtacacagatcacactgcaaatggaatagcgttg
ctgtgggcacctagaccgtatcgtgaacactgtccttcagcaatgcctgttaaagtgcgt
gtgtcctatcaaaagttgttaaaaatttatgtactgaacgcgctaaagcatagacctcca
aagccacagaaaagaagatatttgtttcgatcattcaagtcgacgaaatttttccaagtc
acaacattagattgggtagaggcaggtttgcaagtctgccgtcaaggctacaacatgttg
aatttattgattcaccgcaaaaatttgaattaccttcatcttgattacaattttaacttg
aagccagttaaaacactgacaacaaaagagagaaaaaagtctcgttttggaaatgcgttt
cacctctgtcgagaaatattgcgtcttacaaaattggttgtagatagtcacgtccaatat
cgactgaacaatattgatgcttatcagctggctgacggtctgcagtacatttttgcgcat
gttggccaacttaccggaatgtatcgatataaatacaaactgatgagacagattcgcatg
tgcaaagatctgaagcatttgatttattaccgttttaacacgggtactgttggaaaaggg
ccaggctgtggattttgggcacctggatggcgagtatggttgttctttttacgtggtgtg
acacctctgttggaacgttggcttggcaacttgttgtctcgacagttcgaaggtcgacat
agcaaaggtgtagcaaagacagtcaccaagcaacgcgtggaaagtcattacgatttggaa
ctgcgtgcggcggtcatgcacgatattatcgacatgatgcccgaaggaatcaagcagaac
aaagcgcgaacaatactgcagcatttgagcgaggcatggcgatgttggaaggcgaatatc
ccgtggaaagttcccggcctgcccactccagtggaaaatatgatcttgcgttttgtcaaa
gccaaagcggactggtggaccaacactgcgcattacaaccgcgagcgtatccggcgcggt
gctaccgtagacaagactgtttgtaaaaagaacttgggccgcctgactcgtctgtatctt
aaagcagaacaagagcgtcagcacaactatttaaaggatggaccttatatcagtcctgaa
gaagcagttgctgtatacacaactactgttcattggcttgaaagtcggcggtttagtccg
attccatttccaccactttcttacaagcatgatacgaaattgttgattttggcattggaa
cgtctgaaagaagcgtacagtgtgaagaatcgacttaatcagtcgcaacgtgaagagttg
gcattgattgaacaagcgtacgacaatcctcacgaagcactgtcacgtataaaacgtcat
atgctaacgcagagagcttttaaagaggttggcattgaattcatggatctatattctcat
ttggttcctgtacatgatattgaacctttggaaaaagtgaccgatgcttatctagaccaa
tatttatggtacgaggcggataagcgacgtttgtttccacagtggatcaagccaggcgat
tctgaacctccaccattgcttgtttacaaatggtgtcaaggcataaacaatttgcaagat
gtgtgggatacgtcgaatggtgaatgcaatgtcatgttggaggcaaagtttgaaaaattg
tacgaaaagattgatcttactttactcaatcggctgttgcgtttgatagttgatcataac
attgccgattatatgaccgctaaaaacaatgttgtcattaactacaaagacatgaatcat
accaactcttatggcataatacgtggtcttcagtttgcatcgtttatctcgcagtattat
ggtttggtattggacttgctgctgttgggtttacggcgtgccagtgaaattgccggccct
ccccaatgtccgaatgattttctcacctttcaagatgttgctacggaaactgcacatcca
atacgactgtactgtcgttatgtagatcgaatttggatgtttttcaaattcactgctgac
gatgcaaaagatcttatccagcgatatctcaccgagcatccggatccaaataatgaaaac
attgtcggttataataacaaaaagtgctggcctcgagattcacgaatgcgcctgatgaaa
cacgacgttaatctcggtcgtgccgttttttgggacatcaagaaccgacttccgaggtcg
ttaacgacagttgaatgggaaaatagttttgtatcagtatacagtcgagataatccgaat
ctgttgttcgatatggctggctttgagtgtcgcatattgccaaagtgtcgtatgagtcat
gaagatttttcacatcgcgacggtgtttggaaccttcaaaatgaggtgaccaaagaacga
accgcgcagtgttttttgaaagttgacgaagagtcgatgaatcgttttcataatcgtgta
cgacaaattttgatggcatctggatcgactacatttacaaaaattgtgaacaaatggaat
acagctttgattggtctgatgacatattaccgtgaggcggtggtgaacacgcaagaatta
ttggatttgttggtgaagtgcgagaataaaatccaaacgcgcatcaagatcggtttgaac
agtaaaatgcctgcgcgtttcccgcccgttgttttctacactccgaaagagctcggcgga
ctgggcatgctttccatgggtcatgtgctgataccgcagtccgatttacgctggtgcaag
cagaccgacgccggcggcatcacacatttccgctccggcatgtcgcacgacgaagatcaa
ctgattcccaatttgtatcgctacatacaaccctgggaagcggagttcatcgactcacag
cgtgtctgggccgagtacgcgttgaaaaggcaagaagccaacgcccagaatcggcgcctg
acgctcgaagatctcgaagatagttgggatcgtggcataccaagaatcaacaccttattt
cagaaagaccgacacacgcttgcctacgacaaaggttggcgagtgcgaaccgaattcaaa
cagtaccaggtcttgaaacagaatccgttttggtggacacaccagcgccacgatggcaaa
ctgtggaatttgaacaattatcgtacagatatgattcaagcgctcggaggtgtggagggt
attctcgagcacactcttttcaagggcacctatttcccaacatgggaaggtctgttttgg
gaaaaagcttccggcttcgaagagtcgatgaaatttaaaaagctgaccaacgcgcagcgt
tcgggtctgaatcaaattccgaatcggcgtttcacactttggtggtcgccgacgatcaac
cgtgccaatgtgtacgtcggtttccaggttcagttggatttgacgggcattttcatgcat
gggaaaattcccacgctcaagatcagtctcattcaaattttccgcgcacatttgtggcaa
aagatccacgagtctattgttatggacttgtgtcaggtttgcgatcaagaattggacgct
cttgaaattgaaactgtacaaaaggagacgattcatccgcgaaaatcgtacaagatgaac
agcagctgcgcggatattctcctctttgcccagtacaagtggcatgttagcagaccgtct
cttttagccgattcgaaggatattatggataacacaactacgcagaaatattggatcgac
gtgcaactgcgttggggtgattacgattcacacgacatagagcgctactcgcgggccaag
tttctcgattacaccactgacaacatgagcatctatccatcgccgaccggaactttgatt
gccgtggatttggcgtacaatttgtacagcgcatatgggaattggtttccgggttgcaag
ccgctgatcaggcaagcaatggcaaaaattatgaaagcgaatccggcgctctatgtactt
cgagagcgtattcgcaaaggtttgcaattgtacagttccgaacctacggaaccgtatttg
acttcgcagaactacggcgaactgttttccaatcagataatttggttcgtcgatgacacc
aatgtttatcgtgttaccattcacaagactttcgaaggtaatttgacaaccaagccgatc
aacggggcaatattcattttcaatccaagaacggggcagctatttttgaaaattatccac
acatcggtttgggctggtcagaagcgtcttggtcagttggcgaagtggaaaacggccgaa
gaggtggcggcgttgattcgttcactgccggtcgaagagcagcccaggcagatcatcgtc
acccgcaaggcgatgctcgacccgttggaagtgcatctgttggattttccgaacatcgtg
atcaaaggcagcgagctgatgttgccgtttcaagcttgcatgaaggtggaaaagtttggc
gatttgattttgaaagccaccgagccgcagatggttcttttcaatttgtacgacgattgg
ctgaagacgatctcatcgtacacggtagaattttttttgaagctatacacaaagaggaag
gatgttcttccatcatcatccattgatgctgttattgcattttctcgactaattttgatg
cttcgtgcgttgcatatcaatcctgacaagacgaaagtaattttgaagccggacaagacg
actatcacagaggcgcaccatatttggccgtcacttgccgacgaagagtggatcaaagtt
gagctggcgttgaaagatatgatattagccgattatggaaagaagaacaacgtgaatgtg
gcctcgttgactcagtctgagatccgtgatataattttgggcatggaaatttccgctccg
tctgcccagcgtcagcagattgcagaaattgaaaagcagaccaaagagcagtcgcagttg
accgccaccgccaccagaactgtgaacaagcacggcgacgagatcatctccaccacgacg
agcaattacgagtcgttgtcgttcgcttcgcgcaccgagtggagggtgagggcgatatcg
gcgaccaacttgcacctccgtacccagcacatctacgtcaattcggacgatgtcaaagat
accggctatacttacattttgccgaagaacattttgaaaaagtttatcatcatttctgac
ttgagaactcagattgtaggattgttgtacggcactagtccggctgataatcctcaggtg
aaagaaattcgatgcgtagtcatgcctccccagtggggtacacaccagaccgtacacata
ccgaacgtatttcctgagcacgaatttttgaaagatctggaaccgctgggctggatgcac
acgcagccgaacgaattgccccagctgtcgccgcaggatattacactgcacgcgaaattg
atgaacgaaaatcagaattgggatggcgaaaagaccgtggtcattacttgcagctttact
cccggatcagtttcgttgaccgcttacaagctgacaccgagcggttttgaatggggacga
cagaacacggacaaagggaacaatcccaaaggctatttgccatcccactacgaaaaagta
cagatgttgttgtcggatcgttttctcggctttttcatggttccagtgcagacgtcatgg
aattacaattttatgggtgttcgtcatgatgcgaacatgaagtacgatgtcactttgggc
aatccgaaagaattttatcacgaacagcatcgaccgtcgcactttttgaattttgccacc
atcgaggatcctgaaggaatttattcggcagatcgtgagaatttgctggcatag
DBGET
integrated database retrieval system
