Trichinella spiralis: Tsp_01624
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Entry
Tsp_01624 CDS
T01609
Name
(RefSeq) ubiquitin conjugation factor E4 B
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
tsp
Trichinella spiralis
Pathway
tsp04120
Ubiquitin mediated proteolysis
tsp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Tsp_01624
04120 Ubiquitin mediated proteolysis
Tsp_01624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tsp04121
]
Tsp_01624
Enzymes [BR:
tsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
Tsp_01624
Ubiquitin system [BR:
tsp04121
]
Ubiquitin ligases (E3)
U-box type E3
Tsp_01624
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
10911805
NCBI-ProteinID:
XP_003377469
LinkDB
All DBs
Position
Unknown
AA seq
1089 aa
AA seq
DB search
MPQNQGENNPAMGSNPFALLTAENVEQEMELYTMNAQSAEDTSESSSPVRMDDYDPCSHS
AATRLKQTVTYFENVLLYTHSNTPASDNFMLLYDENSYRNIIENENNCGDLMYEICSLLN
VSNGINNSEFASVLQPLATLRDEACQNSAQWENVCELVFYDLMFCLRKENFAELLAPEET
LAPNVADEQRACQEVFAHVWPESNTFESRIFNYAIICFNNIVTHLNAGVDHSKSCFAIPF
RKIFFSLLISLLSGNMFAQINLDDFRLVMIKSLLVESQDAFWSQLVTEVIQQSSENDPLM
SEKFDKIFHPIISLLLTANGAGKLTKSGMFAQALKAMSFLCQIKVGSSRPLSRRADFINT
PYTTAVGREIALLSSVGQWFDFDSIEETLEFVEEQLQQSEENMSKSRKEVVYKIVRDRLD
TCRYHCCKILKNLLTNATSREAAITYSYNVVVHNIRRGNIMVEQTTTAPDGFFLNFLYTF
YQLSHKVVLDKINPMFILHPKCRKISSRESAINMSEEELNTYINNLHEEWSDPKFTTECF
FLTVYIQHLSVVRGVRMHKRRLRSCQDAQRLLAQVRAKRDNVPNTSSSSSSEEAENYTKC
IVSEIETIVQGLCTAYMLSEATFFDPNLLRSVLTMNGLTPVKVPELFKTLPEFFVEDVMD
LLIFILSETPELIVHCSCDSLAHGLLTLVCNADQFKNPYLVAKVVEVIFYTCPQLRPAAH
SLHMAILNHPLAPANFFRSLMWNRWDRVRNFLTNLQFDFTSRRCSSRCGKMPNTSLSSLT
FASEMPFEADSNFIRFVNMLINDTTFLLDESLEGLKRLNEAQRIMDDVTQWNMVQEVRVT
SEERERILSQMQQDERVVRSSLQLAHVIVDMFDFMTEDIKEPFLSAELGDRLAAMLNFNL
AQLCGPKCRHLRVKNPQRFNWDPRALLDQLTQIYLHLDNDKFAAAIANDERSYSKQLFED
VVGRIVRHKIKAVSQVEQFKLLAERVEQIWEMKREQEVILCDIPEEFTDPLMGTIMRNPV
LLPSGNITDVSSIRRHLLNKPTDPFTRQQLDESMLIPATELKNKIDAWIAEKLKESKSSS
SSSVAKKTD
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgcctcagaatcaaggggaaaacaacccagcaatgggaagcaatccttttgccttacta
acagcagaaaacgttgagcaggaaatggagctgtacactatgaatgcacaaagtgcagaa
gacacatcggagtccagttcaccagtcagaatggacgattacgatccttgttctcattcg
gcggcgacgcgtcttaagcaaacagttacttattttgaaaatgttttgctgtatacgcac
agcaacacgcctgctagcgataactttatgttgttgtatgatgagaattcataccgtaat
ataatcgaaaatgaaaacaactgtggagatttaatgtatgaaatttgttctcttctgaat
gtatccaatggaatcaacaactcggaatttgcttctgttctacaaccgctggcaacgtta
cgtgacgaagcttgtcagaattcggcacaatgggaaaatgtttgtgaattagtgttctac
gacttgatgttctgcctcagaaaggagaactttgcagagcttcttgctcctgaagaaaca
ctagctccaaatgtggctgatgagcagcgcgcttgtcaagaagtatttgctcatgtatgg
ccagagtcgaatacattcgaaagtcgtatatttaattatgccattatttgcttcaacaac
atcgtgactcatttgaacgcaggtgttgaccatagtaaaagctgttttgctataccattc
agaaagattttcttttccctgctcatcagccttctatctggcaacatgtttgcgcagatt
aatttggacgattttcgcctggtgatgatcaaatcattgctagtcgaatcgcaagatgca
ttttggtctcagttagtcactgaagtgattcaacaaagttcggaaaatgatccattgatg
tcggaaaaatttgacaaaatttttcatccaataatttcattattattaactgctaacggt
gctggtaagctgacgaaatccggtatgtttgcccaagcactgaaagcgatgtctttcctt
tgtcagatcaaagttggttcctcaagaccactaagcaggagagcagactttataaacact
ccgtatactacagcggtgggtcgcgaaatagctttgctttcgtccgttggccagtggttt
gactttgatagcatcgaagaaactcttgaatttgtagaagagcagttgcagcagagtgaa
gaaaacatgtctaagagtaggaaggaagtcgtgtacaaaatagttcgagatcgtcttgac
acatgcaggtatcattgttgcaaaattttgaaaaatttattgacaaatgcaacatcccga
gaagcggccatcacctacagttataatgttgttgttcacaatatacggagagggaacata
atggtcgaacaaacgactacggcaccggatggattctttttaaacttcttgtacactttt
tatcaattgtcacataaagttgtattggacaaaattaatcctatgtttatcttgcatccg
aaatgcaggaaaatttcttctcgagaaagtgccatcaacatgagtgaagaagagctgaat
acttatatcaataatttacatgaagaatggtcagatccaaaattcacgaccgaatgtttc
tttcttaccgtttacatacagcatttgagcgtggtacgaggcgtgcggatgcacaagcga
cgtttgcgcagttgtcaagatgcccaacggttgcttgcccaagttagagctaaaagagac
aacgtgccgaacacttcttcttcttcttcttctgaggaagccgaaaattacacaaaatgc
attgtatcagaaattgaaactattgttcagggtctttgcactgcctacatgttatccgaa
gcgactttcttcgatccgaacttgctgcgcagcgttttgacaatgaacggtctgactcca
gtgaaagttcctgaattattcaaaactctcccagagttctttgttgaagatgtgatggat
ttgttgatctttatactcagtgaaacgcctgaactgatagtgcattgctcctgtgattca
ctggcgcacggtttgctgacgttggtttgcaatgcggaccaattcaaaaatccatacctg
gtggccaaggtggtcgaggtgatcttctacacttgtccacaattgagaccggccgcacat
tctctgcacatggcaattctgaatcatccacttgctcctgcgaactttttccgcagtttg
atgtggaatcgatgggatcgagtacggaattttttgacaaatttacaattcgatttcaca
tccaggcggtgttcaagtcgatgtggcaaaatgcccaacacaagcttgtcatcattgact
tttgcaagtgagatgccatttgaagcagattcaaattttattcgttttgtcaacatgctg
atcaacgataccacgtttctgctagacgagagtttggaaggactgaaacggctaaacgaa
gcacaacgtattatggacgatgtgacccagtggaatatggtacaagaagtacgggtcaca
agtgaagaaagagaacgcatcttgtcacaaatgcagcaagacgaaagggtggtccgttca
tcgttgcagttggcccatgttattgtggacatgttcgatttcatgactgaagacatcaag
gagccgttcctgtctgcggaacttggcgatcggctagcggcaatgttgaatttcaattta
gctcaactgtgcggtccgaaatgtcgtcatctgcgtgtgaaaaatccacaacgattcaac
tgggatccgcgggctttgctagaccagcttacacaaatttatctacatttggataatgat
aaatttgcggctgccattgccaacgatgagcgttcttacagtaagcagctgttcgaagat
gtggtcggtcgtattgttcggcacaagattaaagccgtctcccaggtggaacagtttaaa
cttctggccgagagagttgaacaaatttgggaaatgaaacgcgaacaggaggtgatcctg
tgcgatattcccgaagaatttacggatccgctgatgggcacgatcatgcgtaatccggtg
ttattaccttctggcaacatcaccgacgtgagcagtatacgcaggcatttgctgaacaag
cctaccgatccgttcactaggcagcagttggacgaatctatgctaattccagctacggaa
ttgaaaaataaaatcgacgcctggattgcagagaagctgaaagaaagcaaatcatcatca
tcatcatccgttgccaagaaaacagactga
DBGET
integrated database retrieval system
