Trichinella spiralis: Tsp_01788
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Entry
Tsp_01788 CDS
T01609
Name
(RefSeq) putative elongation factor Tu GTP binding domain protein
KO
K03243
translation initiation factor 5B
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
tsp03012
]
Tsp_01788
Translation factors [BR:
tsp03012
]
Eukaryotic type
Initiation factors
eIF-5
Tsp_01788
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
IF-2
GTP_EFTU_D4
GTP_EFTU_D2
MMR_HSR1
Roc
Motif
Other DBs
NCBI-GeneID:
10912097
NCBI-ProteinID:
XP_003377595
LinkDB
All DBs
Position
Unknown
AA seq
1107 aa
AA seq
DB search
MASKKVVGKASTKTVKQKVASENNYSESDGEDEINFVASRPAAYTLLDLNDDADDAPDSE
DSGSVKEAAEVGRKKGQKAAKKKNKQKQKKVEKEDNLDDLVAYIENDAISSKKPAGKKQK
KKLKKAQVDEDIDLLLAELEQEEKGGSVPTANKQEETKVEPVATGANVGQADVDKAVGAV
GKRAKAKAKRKQKLSESKETVDNKAEVKTTAAAATAPSQLIDENKDLPKVNQEANVQPSP
TEIKLDDAVSTVAESETKNVKKKKKGKDEKENKEKKKRTPADLIKQALKKRQEEEERLRQ
LELEEEKRIAELERQREEKERLEREKKERKKREKKEKIEKLKKEGKYMTAEQKQKLQRQR
ERIEMLKQQGVNVPEMKQDVQTDGVKTTMKRPVYADRKRVKKEKPTITEVSQPKEDFPQQ
KARSREVSEKDDVIESWDLLDSERARLSSNDEVKMSEFSKDPSTESETSAVSDQQQAVLE
REKSAESAVVVSHQRQISESQRSDSLSIDMEMEQGYRSPVICVLGHVDTGKTKILDKIRH
THVQDSEAGGITQQIGATFVPREALVEQTKMVKGFDGESLQLPGLLIIDTPGHESFSNLR
SRGSSLCDIAVLVVDIMHGLEMQTIESINLLKQRKTPCVVALNKVDRLYDWKACPNKDIR
AALKAQQRNAQIEFNERVRETVLQFAQQGLNVALFWENPDQEEYISLVPTSAHTGDGMGN
LMQAIIGYCQSKLMDRLLFQPTLQCTVLEVKVIAGLGTTIDVILVNGYLRVGNTIVVAGS
EGPIVTQIRELLMPHPLRELRVKNNYLHNKVVKAAQGVKIVAKDLEKALAGLPLLLAKKE
SEIEELKEELSNSLKKILQAVKLSERGVYVQASTLGSLEALLEFLRAQKIPYFGVNIGPV
HKRDVVKVSTMLEHDPQWAVILAFDVKVDRDAQQMADELEVKIFQADIIYHLQDAFLKYR
EELKQKKRQEFEHLAIFPCKLRVLPQHMYKTRDPIICGVVVEAGILKVGVPLCVPSKEFI
YLGNVSSIEQNHKQLQSVRKNAEVCIKIENTTGEAPKMFGRHFTEQDMLVSRISRETIDV
CKQYFREDLQKADWQLMVELKKVFEIL
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaagaaggtcgtgggaaaagcttctaccaagacagtcaaacaaaaagtagcg
agtgaaaataactacagcgaaagcgatggcgaagacgagattaattttgtagcgtcacga
ccggccgcctatacacttttagatttgaacgacgatgctgacgatgcaccagattcggaa
gatagtggcagtgtgaaagaagctgccgaggttggtagaaaaaaaggacaaaaagctgca
aagaaaaaaaataaacaaaagcagaaaaaagtcgaaaaagaagataatttggatgatttg
gtggcttatattgaaaatgacgccatatcgagtaaaaagcctgccggaaagaagcaaaag
aaaaagctaaagaaagcgcaagttgacgaagatatagacttgttgttagctgaattggaa
caagaagagaaaggaggaagtgttccaactgctaataaacaagaagaaacgaaagttgaa
cctgttgctaccggtgcaaatgttggccaggcagatgtggataaggcagtcggtgctgta
ggaaagagagctaaagctaaagcaaagcgtaagcagaaacttagtgaaagtaaagagact
gtggacaacaaagcagaagtgaaaaccactgctgctgctgctactgctccttcacagctt
attgatgaaaacaaagatctgccgaaagtgaatcaagaagcaaatgttcaacccagccca
acggaaattaaattagacgatgctgtgtcaactgtcgcggaaagtgaaacaaaaaatgta
aaaaagaagaagaaagggaaagatgaaaaagaaaataaagagaagaagaaaagaactcct
gcagatttgatcaaacaagctttgaaaaaaagacaagaagaagaagagagattacgacaa
ttggaacttgaagaagagaagagaattgctgaattggaaaggcagcgtgaggaaaaagaa
cgcctggagcgagagaagaaagagcggaaaaagagagaaaagaaagagaaaattgaaaaa
ttgaaaaaagaaggaaagtatatgaccgctgagcagaagcaaaagcttcaacgtcaacgt
gaacgaatagaaatgctcaaacagcaaggtgttaatgtacccgaaatgaagcaggatgtg
caaaccgatggcgttaaaacaactatgaaaagacccgtatacgccgataggaaaagagtc
aaaaaggaaaagccaactataacggaagtttctcagcccaaagaagattttccccaacag
aaggcccgcagtagggaagtatcagaaaaagatgatgttatcgaatcgtgggatctgttg
gattctgaaagagctcgcttgtcgtctaatgacgaggttaaaatgtccgaattttccaaa
gatccatctactgaaagtgaaacgtctgcagtttcggatcaacagcaagcggtgttggaa
cgtgaaaagtctgcagaatcagcagttgttgtcagccatcaacgacaaatatctgaatca
caacgttcggatagtctgtctattgatatggaaatggaacaaggttaccgctctccagtg
atctgtgtgcttggacacgtagatacaggcaaaacgaaaattttggataaaatccgtcat
actcatgttcaagattctgaggcaggtggaattacacagcaaattggtgccacttttgta
cctcgcgaagctcttgttgaacaaacgaagatggtcaaagggtttgatggagaaagttta
caactacccggcctgctgattatcgatacaccagggcacgagtccttcagcaatctacgt
tctcgtggttcatcactgtgcgatattgctgtactggtggtagatattatgcatggcttg
gaaatgcaaacaattgaatcaattaatttgttgaaacaacgcaaaactccatgcgtggtt
gccttgaataaagttgatcgtctttacgattggaaagcgtgtccgaataaggacattcgt
gcggcgttgaaagctcagcaacgaaatgctcaaattgaattcaatgaacgcgtccgtgaa
actgtacttcaatttgcccaacagggtttgaatgtggctcttttctgggaaaatccagac
caagaagagtacatatccctggtaccgacgtcggctcatactggtgacggcatgggcaat
ttgatgcaggcgatcatcggctattgccaatccaagttgatggatcgtctgctgtttcag
ccgacccttcagtgcaccgtgcttgaagtgaaggtgatcgctggtttgggaaccacaatc
gacgtgattttggtgaacggctatttgagagttggcaatacaattgtggtcgccggatcc
gagggtccgattgttacgcaaattcgcgaactgctcatgccgcatcctctgcgtgaactg
cgagtcaaaaacaactatttgcacaacaaagtggtgaaagcagcgcagggggtgaaaatt
gtggccaaagatttggaaaaagcgttggccggtttgccattacttttggcaaagaaggag
agtgaaattgaagaattgaaagaagaattgtcgaattcattgaagaaaatattgcaagcg
gtgaaattgtctgaacggggcgtttacgtgcaagcgtcgacgttaggttccttggaagcg
ttgttggaatttttgcgggcgcaaaaaattccatattttggcgttaacattggtccggtt
cataaacgtgatgtggtcaaagtctcgacaatgcttgaacacgatccccagtgggcagtg
attctggcgtttgatgtgaaagttgaccgcgatgcacagcaaatggccgacgaattggaa
gtgaaaattttccaagccgacatcatttatcatttgcaagatgcgttcttgaaatacaga
gaagaattgaaacagaagaaaagacaagaatttgagcatttggcaatattcccttgcaaa
ctgcgagtgctacctcagcatatgtataaaacgcgggacccgattatttgcggtgtggtg
gttgaagcgggcattttgaaagtcggcgtaccattgtgtgtgccttcgaaagagttcatt
tatctcggcaacgtgtcaagtattgaacagaatcacaagcagttgcagtcggtgagaaaa
aatgctgaagtttgcattaaaattgaaaatacaacaggcgaagcaccgaaaatgttcggt
cgtcatttcaccgaacaagacatgcttgtcagcaggattagccgtgaaacgattgacgtt
tgcaagcagtattttcgagaagatttacagaaagccgattggcaattgatggtcgagttg
aaaaaagtgtttgagatattataa
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