KEGG   Trichinella spiralis: Tsp_01978
Entry
Tsp_01978         CDS       T01609                                 
Name
(RefSeq) hypothetical protein
  KO
K15180  negative elongation factor B
Organism
tsp  Trichinella spiralis
Pathway
tsp03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    Tsp_01978
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsp03021]
    Tsp_01978
Transcription machinery [BR:tsp03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    NELF complex
     Tsp_01978
SSDB
Motif
Pfam: COBRA1 MINAR1_N
Other DBs
NCBI-GeneID: 10907206
NCBI-ProteinID: XP_003377796
LinkDB
Position
Unknown
AA seq 558 aa
MEVRSSVERFRYDNRQAVLEALSVPMDQLHESIAIFQQKNAVQLQSLFDALRLLEQNPIR
KLDYHETIMRRLREMILEQLNNVKREHNGADKIEDFLSTYYELVDLPTMRSLIIDVMMIA
PRVPVCALQKISSDDNLYNMVDLQIKRLIWELREDIFYREMKIMLTDYMNWWLTQFREAD
TDRYCKSLLDLSGRRKAEVIQKIVCMVGRKTVLYDRLLSYIRMAFLHTKHVVFCNFRHDL
LLSFHEADIKDIANSDPCYKFMLALEAFFKDPLDNRNTEQLQQIVAFYFNSDNPAQGDLS
IILNSYSSIQALCTTTLKLAKDCVSKKILPRECKLLTFAFRLLKIGLGGWKFNREERSID
QKCNIAENDYLQCFLPVLIKVIAAQHALKSFTGIGNAGRLEYFNYADTAHEEIVQFIASD
LVCFTVLFYYALELITGNVLTFQVEILSHVAKYAPAGFWHEQNLHILVQVLKRVPDKLWS
NTSFFNLVFGTLFDAKQRLCKLHALRLAVIICKILSDAQLKRLTKLYTPLTVCNDYSQTF
TYYSHLMDHIDSDLANPT
NT seq 1677 nt   +upstreamnt  +downstreamnt
atggaagtaagaagctcagttgagcgttttcgctatgacaatcgacaggccgtgctggag
gcgttgtcggtgccgatggaccagttgcatgaatcgattgcaatttttcaacagaagaat
gcagtccaattgcagtctttatttgatgcacttcgtttgttggaacaaaatccaattcga
aagctagattatcacgagacgatcatgcgccgattgcgagaaatgattttggaacagttg
aataatgtaaagcgagaacataacggtgccgataaaattgaagactttttaagtacttat
tatgaattggttgatttaccaacaatgcgatcacttataattgatgttatgatgatagcg
cctagagttcctgtttgcgctttgcaaaaaataagttctgatgacaatttgtataatatg
gttgatctacagatcaagcgtttaatttgggaattgcgtgaagatatattttaccgtgaa
atgaaaataatgttgacagactacatgaactggtggctaactcaatttcgtgaagcggac
actgatcgttattgcaaatcactgttagatctcagcggtcgtcgaaaagcagaagtaatt
caaaaaatagtttgcatggttggcaggaagacagtcctatatgatcgtttactgagctac
atcagaatggcatttttgcatactaagcatgttgtgttttgcaatttcaggcatgatttg
ctgctatcttttcacgaagcggatattaaagatatcgcgaactctgatccgtgctataag
tttatgttagctttggaggcattttttaaagatcctcttgataatcgtaacacggaacaa
cttcaacagatagttgctttttatttcaacagtgataatccggctcaaggagatttgtcc
ataattctcaactcatattcttcgattcaagcattgtgcacgacaacgctgaagctagca
aaagactgcgtttcaaagaaaattttgccaagggagtgtaagttgttaacgtttgcattc
cgtctattgaaaatcggccttggcggttggaagtttaatcgcgaagagagaagcattgat
cagaaatgtaatattgcagagaacgattatctacaatgttttttgccagttttgataaaa
gtaattgctgcacaacatgcgctgaagtctttcacaggaattggaaatgcaggacggtta
gaatattttaactatgcagacaccgcacatgaagaaatagtccaatttattgcatccgat
ttggtttgtttcactgtactgttttattacgcgttggaactcatcacgggcaatgtgtta
acttttcaagtggaaattctgagtcatgtagctaagtatgctccggctggcttttggcat
gagcaaaatttgcacattctcgttcaagtattgaagagagttccggacaagttgtggagc
aacacatctttctttaatctcgtcttcggtactttgttcgatgccaagcaacggctttgc
aaactgcacgcacttcgcctagctgttattatttgcaaaattctgtcagatgcacagttg
aaacgtttgacaaaattatacacaccactaacagtgtgcaatgattattcacaaactttt
acatattattctcatctgatggatcacattgattccgatttagcaaatcctacttaa

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