Trichinella spiralis: Tsp_02107
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Entry
Tsp_02107 CDS
T01609
Name
(RefSeq) putative exosome complex exonuclease RRP43
KO
K12586
exosome complex component RRP43
Organism
tsp
Trichinella spiralis
Pathway
tsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tsp_02107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_02107
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Tsp_02107
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DHX37_C
Motif
Other DBs
NCBI-GeneID:
10907514
NCBI-ProteinID:
XP_003377931
LinkDB
All DBs
Position
Unknown
AA seq
280 aa
AA seq
DB search
MSEMLSDKQKKVIEPSEHIREYITKNKIRYDGRKTNQFRNAAVHRNMITTADSSAVARIG
GTAAICGINLEIMENDTLIPSPGLVVNIESVSPTIVVSWQNEIDKTKCILKSLIEKNIVN
SKSLEIFDGELFWVIYCDFVVLDCAGGILEVCLVALLAALQELRFPVVKVLHEDFKINLK
NIKVDTAETSPVLFPNVYPVACSFLKFGDEILICDPTDEETKLIGDAFTIIVGAQKTLCG
LFKTGGAASLSKQLIDESVEHALKRRRHILQLLGIEDEDH
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaatgctgtctgataaacaaaagaaggtaatagaaccatcagagcatattaga
gaatacattacaaaaaataaaatccgttacgatggtcgtaagaccaatcaattccgcaat
gcagctgttcatcgcaatatgataacgaccgcagacagctcagcagttgctagaattgga
ggaacagcagcaatttgtggaattaaccttgaaataatggaaaacgacacgttaattccg
tcaccaggactggtggtgaacattgaatctgtatctccgacgattgtcgtaagttggcaa
aatgagattgataaaacgaaatgcatattgaaaagcttgattgagaaaaacatagtgaat
tcaaaaagtttggaaatttttgatggagaactgttttgggtgatttactgtgattttgta
gttttggattgtgcaggtggcattttggaagtctgcttagtagctcttttggcagcattg
caagagctgagatttcccgttgtaaaagttttgcatgaagatttcaaaattaatttgaaa
aatattaaagttgatacggctgaaacttcccctgtattatttccgaacgtttaccctgtc
gcctgcagttttttaaaatttggtgatgaaatattaatttgcgacccaacggatgaagaa
acaaaacttattggtgatgcattcaccatcattgttggtgctcagaaaactctttgcggt
ttgttcaaaactggcggcgctgccagtttaagcaaacagttaattgatgaatctgttgaa
catgctttgaaacgaagacgacatattttacaactgctaggcattgaagatgaagatcac
tga
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