Trichinella spiralis: Tsp_02153
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Entry
Tsp_02153 CDS
T01609
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit 3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
tsp
Trichinella spiralis
Pathway
tsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tsp_02153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_02153
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Tsp_02153
mRNA degradation factors
3'-5' decay
Pan complex
Tsp_02153
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
Motif
Other DBs
NCBI-GeneID:
10907468
NCBI-ProteinID:
XP_003377885
UniProt:
E5SEI4
LinkDB
All DBs
Position
Unknown
AA seq
734 aa
AA seq
DB search
MNYSQSVTNAAAGSSRTEHAAANAHHQHSAVFSQYQTVLSRPAFQSSLCNRSVKMGTSYF
TADPNCRFPNSNGSFKCDSNMMAESGSKWLYGNHVVDYPLNLTTNNSNSQSIVYMPHHRT
ALHSCDSSSSLRFQTPAKNQSVLPENCESSDSVIEGQFIEKFANFSLNKVTTSAEVGRVD
FDNALSNRYDVFGTANVEYSQFNAVSAGCNTLTTSSLYNYTGKDHQGNNCFVEHDCINGV
TYFYSNEGQKSFPYDGSAAGHYLYNGAPSYLSNPAYCKSDASCFSICAELKAELQARQQL
NCPHSYSYEYHDVPQKVDNYYKLLPLEEVTTNPMMQQNGYFCLVTTAYKAVLADDGLYYC
LRRLHGFRVVNSNALSAVYQWKTKVSSPNVVGVKEAFTNKAFGDNSLIFVFDYYPGAETL
KSRHFSSQKQCKSNNNFQNRDNITTYDPTSKNSTVENKPIAESLLWSYVINICSALRVIH
SAGLAARTIDPSKILVVGKSRILLNCCSIFDVLTFEQTQNNHVLISRYQQDDLVGLGQLI
FSLACGNLSPLQQANFASSMEFLSRHYSADLKNLILYLLHGQRSKNVMEIMPMIGARFFS
HLDSWLMRVDMLENELIKEMENGRLFRILCKLATVNERPILGMDPQWSETGDRYLLKLFR
DYVFHQVTEDGSPWLDLGHIIQCLNKLDAGVAEKIMLMSRDEQNVLIVSFADLHRCLDQS
FTEIVQNTCQGVTS
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgaactactctcaaagtgttactaacgcggccgctggcagttcacgtacagaacatgct
gctgcaaatgcccatcatcagcattcagctgtcttctcacagtaccaaactgttttatct
cgacctgcatttcaatcctcattgtgcaatcgatctgtcaaaatgggtacttcatatttc
acagctgatccaaactgcagatttcctaatagcaatggctcttttaaatgtgattcaaat
atgatggcagaatcaggaagtaaatggttgtatggaaatcatgttgtcgattatccttta
aatttaacgacaaataatagcaacagtcagagcatagtttatatgcctcatcatcgaacc
gcactgcattcctgtgattcctcctcctctttgcgatttcagactcctgctaaaaatcag
tctgtcttgccggagaattgcgaatcatccgactctgtaatagaaggtcagtttatagaa
aaatttgccaacttctctcttaacaaagtgacaacaagtgctgaggttggtcgtgttgat
tttgacaacgccttatcgaatagatatgatgtgtttggtactgctaatgtcgaatattct
caatttaatgccgtctcagcgggttgcaacacattaactactagttcactctataattat
actggtaaagatcatcagggaaacaattgttttgttgagcatgactgcataaatggggtc
acatatttttatagcaatgaaggtcagaaaagttttccttatgacggatccgctgctggg
cattatttgtataatggtgcaccatcatacctgtccaaccctgcatattgcaaatccgat
gcatcttgtttttcgatttgtgctgaactgaaagcagaattgcaagcaagacaacaattg
aattgtccacattcatattcgtatgaatatcatgatgtccctcaaaaagtggataattat
tacaagcttttaccattggaagaagtgacgactaatccaatgatgcaacagaatggttac
ttttgtttagtgacaacagcttacaaagctgttttggccgatgatggactgtattattgt
ttgaggcgtttgcacggatttcgggtcgtaaatagcaacgctttatcagcagtttatcag
tggaaaaccaaagtaagcagtccaaatgtggttggagtgaaagaagcatttacaaacaaa
gcctttggcgacaattctttgatatttgtcttcgattattacccaggtgcggagaccttg
aaaagcagacatttcagcagtcaaaagcaatgcaagtcaaacaacaattttcaaaataga
gataatatcaccacgtatgacccaacttcgaaaaattcaacagtggaaaacaaaccaatt
gcagaaagtctgctgtggtcgtatgtgattaacatttgttccgcactgagggttattcac
agtgccggtttggctgctcgaacaattgacccttctaaaatactcgttgttggaaaatct
agaattcttttgaattgttgctctattttcgatgtgctcacttttgaacaaacgcagaac
aatcacgtattaatatcacgttatcaacaagatgatctggttggtttgggacagctaatt
ttctcactcgcttgtggcaatttgtctcctctgcagcaagctaacttcgcatcttcaatg
gaatttctctctcgtcactattcagcggatctgaaaaatttgattttatatttacttcac
ggacaaaggtcgaaaaacgtgatggaaatcatgccaatgattggtgccagattttttagc
catctcgattcatggttgatgcgagtagacatgttggaaaacgaactgataaaagaaatg
gaaaacggacgcttatttcgtatcttgtgcaagttagcaactgtcaacgaacggcccata
cttggaatggatccacagtggtctgaaactggagatcgttatctgttgaagctgtttcgt
gattacgtttttcatcaagtcacggaagatggaagtccttggttggacttgggccacatt
attcagtgtttaaataaacttgacgcaggagtagcggaaaagataatgctgatgtccagg
gacgagcagaacgtgttgattgtatcatttgctgatttgcatcgttgccttgatcagtca
tttacagaaattgtacaaaacacctgccaaggagtaacaagttga
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