Trichinella spiralis: Tsp_02161
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Entry
Tsp_02161 CDS
T01609
Name
(RefSeq) u4/U6 small nuclear ribonucleoprotein Prp31
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
tsp
Trichinella spiralis
Pathway
tsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tsp_02161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_02161
Spliceosome [BR:
tsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
Tsp_02161
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
10907460
NCBI-ProteinID:
XP_003377877
LinkDB
All DBs
Position
Unknown
AA seq
593 aa
AA seq
DB search
MEAFWLVVATTVIIYILFCAYAIQNPPKYVMMKAPAFKAKIIAHRGEVPGGSTQNLMDRR
IPLLEEILKQTYPIPVNIDIKINNDKLIEKNLVMSLAEELLADLEEGDDDDYNVAEEAAE
GEEKETRTRSIYNRVTAVAHLLHSDHFQGIMQRIADRMENSHLTSISGPVESHPEYLLIV
DANGLAAEIDNEIAVVHKFVRDKYAKRFPELESLVQMPMEYVACVKELGNDILDKAKHNE
QLQNILLPSTVIVISVTASTTQGECLTDEELAIVMEGCEMAIQLNDAKLKIYQFVESRMH
CIAPNLSVILGPEIAAKLMGTAGGITQLSKIPACNVLILGSQKRTLSGFSSTTILPHTGY
IYYTPLVQSLPADLRRKAARLVAAKCTLAARIDSVHSHSDGSVGLKLAEEVRSKFEKWQE
PPPKKLIKPLSKPLDQASKKRGGRRIRKMKERLGLTELRRKANRMNFGQIEEDILQEHMG
FSLGQAKTGGPGGRLRAPQVDQKSRARMSKTLQRNMQKQQSTFGSVTSVRRQLAGTISTV
TFTPVQGLEIVNPQAAEKDKSAEAASAKYFREDAEFIKVETPIPGHHHNHQSK
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgttctggttggtggttgcaacgactgttataatttatatacttttctgtgcg
tacgctattcaaaatcccccaaaatatgttatgatgaaagctcctgctttcaaagcaaag
attatagctcatcgtggcgaagtgcctggtggttcaacgcagaatctgatggatagaaga
ataccattgttggaagaaattcttaagcaaacttatccaattccagtaaatattgacatt
aaaataaataatgacaagcttattgaaaagaatttggtcatgtccttagctgaggaattg
ttggccgatttggaagaaggtgatgatgatgattataacgtagcagaagaagcagcagaa
ggagaagaaaaggaaacgcgtaccagaagcatttataaccgggttacagcagttgcacat
ttgctgcacagtgatcattttcagggtataatgcagagaattgcggatagaatggaaaat
agtcatttgactagtatttctggacctgtggaatcgcatcctgaatatttgctgattgtt
gacgcgaatggcttagcagcggaaatcgataatgaaattgcggtggtgcacaaatttgtt
cgcgacaaatatgcgaaacgttttcccgaattggaatcacttgttcaaatgccgatggaa
tacgtcgcttgtgtaaaagagcttggcaatgatattttggacaaagcgaagcacaatgaa
caattgcaaaatattttgttgccttcgactgtaattgtgatcagcgttactgcttcgaca
acacaaggtgaatgtttgacagacgaagagttggcaatagtgatggaaggctgtgagatg
gcgattcaactgaacgatgcaaaattgaaaatttatcaatttgtcgaatctagaatgcat
tgtattgcgccgaatttgtcggtcattttagggccagaaattgcggcgaaattaatggga
accgctggtggaataacacaactgagcaagattccagcttgtaatgttctgatacttgga
tcacaaaaacgaacgctaagcgggttcagctccacaaccattttaccccatactggatat
atttattatactcctcttgtacaatcacttccggccgatttgcgacgcaaagctgctcga
ctagtcgctgccaagtgcactttagctgctcgaatagattcggtgcattcgcattcggat
ggatcagttggtctgaaacttgcagaagaggtgcgaagtaaatttgaaaaatggcaagaa
ccaccgcccaagaaattaatcaagcctcttagcaagcctttggatcaagcgagcaaaaag
cgcggcggtcgacgaatacgaaaaatgaaagagcgtttaggtttgacggagctgagacgt
aaagcgaaccggatgaattttggccaaatcgaagaggacatactccaagagcacatgggc
ttttcgttgggccaggctaaaactggtggtccaggcggacgccttcgggcaccgcaagtt
gatcagaagagtcgagcacgtatgtcgaaaacactgcagaggaatatgcaaaagcagcag
agtacttttggaagtgtaactagtgttcgtcgacaattagctggaaccatttctacagta
actttcactcctgtacaaggtttggaaattgtcaatccacaagcagccgaaaaggacaag
tcggcggaagcagctagtgcgaaatattttcgagaggatgcggaatttatcaaagtcgag
acgccaattcctggccatcatcataatcatcaatcgaagtaa
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