Trichinella spiralis: Tsp_02172
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Entry
Tsp_02172 CDS
T01609
Name
(RefSeq) RNA polymerase-associated protein CTR9-like protein
KO
K15176
RNA polymerase-associated protein CTR9
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsp03021
]
Tsp_02172
Transcription machinery [BR:
tsp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
Tsp_02172
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_19
TPR_1
TPR_16
TPR_CcmH_CycH
TPR_14
TPR_11
TPR_12
TPR_17
TPR_8
TPR_7
TPR_9
TPR_10
TPR_6
TPR_Slam
ANAPC3
T7SS_EccA1_N
TPR_21
Motif
Other DBs
NCBI-GeneID:
10907640
NCBI-ProteinID:
XP_003377976
LinkDB
All DBs
Position
Unknown
AA seq
1189 aa
AA seq
DB search
MEKRSNLFEIPLYNNKNEVIEIDFDSHIPDAKEIMDILVQERAPLYLWIKLALEYYKRGR
DSDFATLLEMSGTDAYVNYPDYARDQMRALDLLAAYFVQKGTKERSKDERAEILAKSTVL
YTTSDKVNMYDKVLEYLITEYKYHLLGRAYLCSQDWEKIDQADAQFNFVLNQTPNSTAAL
LGKAAIAFKKKDYKNALLYYKKTLKTNPNCPAEVRLAMGNCFVKLGHLAKARLAFQRALE
LNPNCVGALSGLAILEMKDGTAESIKSAVHRLTRAYSIDKEDPTVLNQLANHFFFKRVLL
LVVVQCRIGVFDRQYSHQLALYAFHKTENEALRAESCFQLGRGEYEQAFQYYYQANQFQS
PASHLPLYGLGQMYIQRSDNDKENAIQCFETVYARHPESQETCRILASLYASSNNMERKA
KARTMFAKLIEHNDDDVDTWVEYAMILADCRGYEIQALKAFDKAMKLYLEKPDIEIPAEF
YNNVGAMHFRAAKYTEAASYFEKALQKVSSIPTDHPLYNSLWVTCSYNLARVKELLYELE
EAEKMYKDILRRHPAYVHCYLRLGCMSRDRGQIYDASVWFKEALQFNPDDPDAWTLIGNL
HLGKQEWGPAQKKFERILKQPSTAHDPYSLVALGNVWFLSLQSYNHEKEKQRKYEDRALS
LYKQALRVHPENILAANGVGCVLAHRGYFQEAKEVFSRVCEATGDFVDALLNIAHIYVEL
RNYVAAIQTYECCLKKFAIHGRLDIWQCLAVAYYRANRLPQSKRILLSARIFAPYDAMTL
YSLSFVLKRHAVHVMKDLKSGLKQVLDAVKDLEVAERQFLFLAKFTDVSSSVRRGAAIEG
QKCTDILSQAQHHVERAQRKEEAENELRRNLEEERRLLLEKQQEEQRLKEEERKRLLEEQ
EIRRRDFIERTKKLLIMPTFEEEKPKRAPKGRKRKDEEFVNDDSDLGDWEPGRQSLPKKR
KPKALPKERRGRQNEKRRLRTATTDSEAEASTANVSKPKNRREALSDLNAKQKAKIKSRE
ILSSTSSSGDSAKDAMERPSTYLGTPEQSDVSQSNIVVKKEDFEAQGDDVDVDDVIREVF
DEPETAEIKTEIKPPSRKRYAFESEESDSGSEIRRIPRDRFILESDDSDDEDPQEEYSVA
ISISSELVNNNNVGALNFDQTTSNIHSNAGSRQTHQWKFVEKRSSMEKT
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaaggtcaaatttgtttgaaattcctctttataacaacaaaaatgaagtcatc
gaaattgatttcgattcgcacatacccgatgcaaaagaaattatggatattcttgttcaa
gaacgtgcgcctctatacttatggatcaaactggcacttgaatattataagcgaggccga
gattcagattttgcaactctacttgaaatgagtggaaccgacgcttatgtgaattatcca
gattacgccagagatcagatgcgtgctctggatttgttagctgcttattttgttcaaaaa
ggaacgaaagagaggtcaaaagatgaaagagctgaaatactagcaaaatccactgtttta
tatacaacatccgacaaagtaaacatgtatgacaaggtattggaatatcttattacagaa
tataagtaccacttacttggtcgagcgtatttgtgttctcaagactgggaaaaaattgat
caggctgatgcgcaatttaattttgtgctcaatcaaacgccgaatagtactgctgcttta
cttggaaaagctgcaatagctttcaagaaaaaagattataaaaatgcattactttattat
aaaaaaactttgaaaacgaatccaaattgtccagctgaagtgcgacttgctatgggcaat
tgttttgtcaaactgggtcatttagccaaagcacgtcttgcttttcaaagagctttggaa
ttgaatccaaattgtgtgggcgctttgtccggcttggctattttggaaatgaaagatggc
acggcggaaagcatcaaatctgctgtacatcgcttaacccgagcttatagcattgacaaa
gaggatcctacagttttgaatcagcttgcaaatcatttctttttcaaaagagtactttta
ttagtagtagtacagtgtcgtattggcgtgtttgatcgacagtactcccatcagttggcg
ctgtatgcttttcataaaactgaaaacgaggcactgcgagcagaaagttgttttcaactg
ggtcgaggcgaatatgagcaagcttttcaatattattatcaagcgaatcaatttcaaagc
ccggcctctcatttacccctttatggattgggtcagatgtatattcaacgttccgacaat
gacaaggaaaatgcaattcaatgctttgaaactgtttatgctcgacatccggaaagtcaa
gaaacttgcagaattttggcttcattgtatgccagctcgaataacatggaaagaaaagcg
aaagctaggacaatgtttgcaaagttaattgaacacaatgatgatgatgtagatacttgg
gttgaatacgcgatgattttggccgactgtcgaggctatgagatacaagctttaaaagcg
tttgataaagcgatgaagctttatttggaaaagccggatatagaaattccagcagaattt
tacaataacgtcggtgcgatgcacttccgtgcagcgaagtatactgaagcagcgtcatat
tttgaaaaagcattgcaaaaagtgagcagtattcctaccgatcatccactttacaattca
ctgtgggtaacgtgctcgtataaccttgcgcgtgtgaaagaattgctgtatgaattggaa
gaggcggagaaaatgtacaaagatatactacgccgacatccggcatatgttcactgttat
cttcgtctaggatgcatgtcaagagacagaggacaaatttatgacgcgtccgtttggttc
aaagaagcgttgcaatttaatccggatgatccggacgcttggactttgatcggaaatttg
cacttgggcaagcaagaatggggaccggcgcagaaaaaatttgaacggatcttgaaacag
ccatccacggctcatgatccttacagtttggtcgctttgggaaatgtttggtttctcagt
ttgcaaagttacaatcacgaaaaggaaaagcaacgcaaatatgaagatcgtgcgttgtcg
ctttacaagcaagcgcttcgggttcaccctgagaatattttggccgcaaatggagtcgga
tgtgttttggctcacaggggctattttcaagaagccaaggaagttttctctagagtttgt
gaagccacgggcgattttgtcgacgctttgctaaacattgcgcacatatacgtcgaattg
agaaactacgttgccgctattcagacgtacgagtgttgcttgaaaaagtttgcaattcac
gggcgtttggacatttggcaatgtttagctgttgcgtattacagagccaatcgtcttccg
cagagcaaacgcatacttctttcagctagaatttttgcaccgtatgatgcgatgacgttg
tacagtttgtcttttgttttgaaaaggcacgctgtgcatgtgatgaaagatctgaaatcc
ggcctgaagcaagtgttggatgcggtgaaagatttggaagttgccgaacggcaatttttg
tttttggcaaaattcaccgatgtgtcgagcagtgttcgacgcggtgcggcaatagaaggg
caaaagtgcacggatattctttcccaagcgcagcatcacgtcgaacgagcgcagcgtaaa
gaagaagccgaaaatgaattgcgtcgaaatttggaagaagaaaggcgtcttctccttgaa
aagcagcaagaagaacaaagactgaaagaggaggaaaggaagcgtcttcttgaagagcaa
gagattcgacgtagagattttattgaaaggactaaaaagctgttgatcatgccaactttt
gaagaggaaaagccaaaaagagctccaaagggtagaaagcgaaaagatgaagagtttgtc
aatgatgacagtgatctcggcgattgggaacctggccgtcagtcgttgccaaaaaagagg
aaacccaaagcgttgccaaaagaacgacgcggtagacagaatgaaaaacgtcgtttacga
actgctactactgacagtgaagctgaagcttctacggcaaatgtttctaagcctaaaaat
cgtcgtgaggcattgtccgatttgaatgccaagcagaaagcaaaaattaaaagtcgtgaa
atcttgtcatccacttcgtcttccggcgatagtgcaaaggatgccatggaaagaccaagc
acttatttggggactccggaacagtcggatgtcagtcaatctaatattgttgttaaaaag
gaagattttgaagctcaaggtgatgatgttgacgttgatgatgtgattagggaagttttt
gatgaaccagaaacggcggagataaaaacagaaatcaaaccaccttctcgaaaacgttat
gcttttgaaagtgaagaaagcgattctggctcagaaatacgtcgcatcccaagggatcga
tttatacttgagagcgacgattctgacgacgaagacccacaagaagaatatagtgtggct
atctcaattagcagtgaattggttaataataataatgttggagcattaaactttgatcag
acgacatctaatattcacagtaatgcgggttccaggcaaacccatcaatggaaatttgtc
gaaaaaagaagcagtatggaaaagacataa
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