Trichinella spiralis: Tsp_02371
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Entry
Tsp_02371 CDS
T01609
Name
(RefSeq) putative transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsp03021
]
Tsp_02371
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_02371
Transcription machinery [BR:
tsp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
Tsp_02371
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
Tsp_02371
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
HTH_44
YqgF
S1
Tex_YqgF
HHH_9
Tex_central_region
Spt6_S1
HHH_3
S1_RRP5
Tex_N
Motif
Other DBs
NCBI-GeneID:
10908174
NCBI-ProteinID:
XP_003378256
LinkDB
All DBs
Position
Unknown
AA seq
1361 aa
AA seq
DB search
MADWIDDQAIESETEGFDEDEVRPAKKSRRRIISDDEEEEEEETDSERIKEEFGNFIVDD
EDVEEEEDKKSEDYDSEEMLSELEEEDKELLKENLGLSIRQIDIHRNRHISHRHINYADE
EGSDTGEESGLDDFIQDDDEDEDFGLKRRRRKRRHHALGVSEGALEEARDLFGVDFNLRA
VPVTEAEPEELLAEAKWIFKTVFNCRSLSCQEERSPSKSNSALERIREVLGFIRNMDYEV
PFIAFYRKEHVQPYLKMKDLWKIYHCDAQWCNNREKKHLLKQQLERMRDYQLQLKRQSDG
GTDELVCGREIRDSDFDVLSSADTVEELNDWYAFFMLYYSRLYRTRANEQIDLERAGKFK
QAAGYSQYAQLLEVGIGGLADKFGLTAEQFAENLEVGYCRNEVTQPSQSAREVAEQYIVE
CLLPDVDSVLKGAKWMVAMRFARNPIVRRIVREQYRQRVTVSVRATMHGRSLIDEAHPLY
TCKYLKNKPVRLLKNDEYLRLKEAEESHLINMIFSIDGSESKRTTYYNELLQQQLFHRVG
LFDFVDGLEIFKYLNSVAEEWNSLRHEALKQCLDDMLYPIFEREVRLQLQREAEEHVIEK
CANRMQEWLRIAPYWHDPKVERKREDYNRLTILGIAYSLEPDAVYYKKDLESLVVDLQAS
GTIGRNIPVEIVDPELARVYADSGPANQEFPTYSILLRQAISIARRLQDPLIEFSQLVTP
DDEILSLKFHPSQNMVSKEELIQRITEEFINRVSEVGVDVNRCIEHPYTAPLLQFVCGLG
PRKASHLLKILTPEELHLENRSKLVTHCRMGPKVFMNCAGFIKIDTARMMDKSGVFIDVL
DGSRVHPETYEWARKMAFDALEYDETVDDYDPGTALDEILESPERLKDLDLDAFAEELQR
QGFGNKNITLYDIRAELNHRYKDLRALYHPPTREQLFYMLIKETPRTFGPGKLIMAKVLN
VVYKRPSPNMFEEARPVKDSTTNLWQCPICFKDDFPELGEVWKHYDANECPGQAIGVRVR
LENGIAGFIPIKYLSDRHVNDPNERVKSGMTIACRIMKIDTYRFSCDLTCRTSDLEDREF
QYGTGRDNHYDFKAEEEDRKKEETARMMKNDDAIYKRVIAHPSFRNCTCSEAEELLDQMD
EGDAIIRPSSKVYEDLDEILARFVHPVAMSVREVLTYKYYRDSNGGDTQILENSLVEEKQ
KNGGNKIPYSLSACKDYPGKFLLSYLPNTRVRHEYFTALPDGFRFRGRVFNNLNNLLAWF
KQHFNEPPPGYTPSQYDSLNRMGIVTPRGAVGIGTNAWNGGTRPMIYLPSPSQSGFPGQS
PGVPRLMRTPQFTVPPTPSDPYLGAQQPPPPIWPAVIPPPA
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atggctgattggattgatgatcaagcaattgaatctgagactgaaggttttgatgaagat
gaagtgagaccagcgaaaaaatcacgacgacgtattattagtgatgacgaggaggaggaa
gaagaagaaactgattcggaacgcattaaagaagaatttggcaatttcatcgttgatgat
gaagatgtggaagaagaggaggacaaaaaatctgaagattatgactccgaggaaatgctc
agtgaacttgaggaagaagacaaagaactgttgaaagagaacttgggcttatcgattcgg
caaattgatatccatagaaatcgtcacatttctcatcgtcatataaactacgcagatgag
gaaggaagtgatacgggtgaagaatctggcttggatgattttattcaagatgatgatgaa
gatgaagattttggattgaaaagacgaagaagaaagaggaggcatcatgctttgggagtg
tcagaaggcgctctcgaagaggctcgagatttgtttggggtggattttaatcttcgtgcg
gttccggtaaccgaagcggaacctgaagaactgcttgccgaggccaagtggattttcaag
acagttttcaattgtcgcagtttgagttgtcaagaggaacgttcaccgtcgaaatccaat
tcggctttggaacgaatccgcgaagtgttgggcttcatccgaaacatggactacgaagtt
ccattcatcgccttttaccgcaaagagcacgtgcagccgtatttgaagatgaaagatctg
tggaaaatttaccactgcgacgcacagtggtgcaataatcgcgaaaagaagcatctgctg
aaacagcagttggaacggatgcgcgactatcagctgcagttgaagcggcagtccgacggc
ggcactgacgagctggtatgcggtcgtgagatccgggattcggatttcgacgtgctctcc
agcgcggatactgtcgaagagttgaacgattggtacgccttcttcatgttgtactattca
cgcttgtacaggacccgggcaaacgagcagatcgacctcgaacgtgccggcaaattcaag
caggctgccggctatagtcaatatgcccagcttttggaagtcggtattggcggcttagct
gacaagttcggcttgacagccgagcagtttgctgaaaatttggaagttggttattgtaga
aacgaagttactcagccgagtcagtcggctcgtgaagttgccgaacagtacattgttgaa
tgtttgcttccggatgtggactcggtgctgaaaggggccaagtggatggtggcgatgcga
tttgctcgcaatccaatagtgaggagaattgtgcgggagcaataccgacaacgggtgacg
gtcagcgttcgtgcgacaatgcacgggcggtcgctgatcgacgaggcgcatccactttac
acttgcaaatatttgaaaaataagcccgtacgattgttgaaaaatgatgaatatcttcgg
ttgaaagaggcagaagaaagccatctcataaatatgatcttttccattgatggttcagaa
agcaaacgaacgacttattacaacgaactgttgcaacagcagttgttccacagggtaggg
ttatttgactttgtagatggattggaaattttcaagtacctcaattctgttgccgaagaa
tggaatagcttgaggcacgaagcgttaaaacagtgtttagacgatatgctttatcccatt
ttcgaacgggaagtacgattgcagttgcagcgtgaagctgaagagcatgtcatagagaaa
tgcgcaaatcgaatgcaggaatggttgcgcattgctccctattggcatgatccgaaagtg
gaacggaaacgtgaagattataatcgtttgaccattcttggaatcgcttattctttagag
cctgatgcggtgtattataaaaaagatttggaatcgttggtggtggatttgcaagccagc
ggtacaattgggagaaacattccagtcgaaattgtcgatccagaattggccagggtttac
gccgatagcggacccgccaaccaagaatttccaacatattcgattctgttgcgtcaagca
attagcattgctcggcgtttgcaggatccgttgatcgaattcagccagcttgtcacgccg
gacgatgaaattttgtctttgaaattccacccttctcaaaatatggtttccaaagaagag
ttgattcaacgaattaccgaagaatttatcaatcgcgtcagcgaagtcggtgtggatgtg
aaccgttgcatcgagcatccgtacacggcgccgttgttgcagttcgtctgcggcttggga
ccccgcaaagcttctcacttgttgaaaattctcaccccagaagagttgcatttggaaaat
cgttccaaattggtcacccactgtcgcatgggtccgaaagtgttcatgaattgtgccggc
tttattaaaatcgacaccgccaggatgatggacaaatccggcgtatttatcgacgtactg
gacggttctcgggtgcatcctgaaacttacgaatgggcaagaaagatggcattcgatgct
ttggaatacgacgagactgtggacgattatgatcctggcacggcgttggatgaaattctc
gaatcacccgaacgattgaaagatttggatttggacgcttttgccgaagaattgcaaaga
caaggattcggaaataagaacatcacattgtacgatataagagccgagttgaatcatcgg
tacaaagatttgcgggcgttgtaccatccaccgactagggaacagttgttctacatgcta
ataaaagaaacccctcgaacttttggaccgggcaaattaatcatggccaaagttttaaat
gtagtctacaaacgaccatctccgaatatgttcgaagaagctcggccagttaaggacagc
accacaaatttgtggcaatgtccaatttgtttcaaagatgattttcccgaattgggcgag
gtctggaaacattacgacgccaatgaatgtccaggtcaggcgattggggttcgtgtacgt
ctggaaaacggcattgctggcttcattccaataaaatacttgtccgatcgtcacgtcaac
gatcccaacgagcgcgtgaaatctggcatgacgatcgcttgtcgcattatgaaaatcgac
acttatcgtttttcctgcgatctcacatgccgcacgtcggatcttgaagatcgtgaattc
caatacggaactggacgtgacaatcattacgatttcaaagctgaagaagaagatcgaaaa
aaggaagaaacagcaagaatgatgaaaaatgacgacgcaatttacaaacgagtgatcgcg
catccgtcgtttcgaaactgcacttgcagtgaagctgaagaattgctcgatcaaatggac
gaaggcgacgctatcattcgaccaagcagcaaggtgtatgaagatttggatgaaattttg
gctcgatttgtccatccggttgccatgagcgtccgagaggttctcacctacaagtattac
cgcgattcaaacggcggagacactcagattttggaaaactctttggttgaagaaaaacag
aaaaacggtggaaacaaaattccctactctttgagcgcttgtaaagattatcctggaaaa
tttctactctcctacttgcccaatactcgcgtcaggcacgaatatttcaccgccttgccc
gatgggtttcgatttcgcgggcgtgttttcaacaacttgaacaatctgcttgcctggttc
aagcaacacttcaacgagcctccccctggatatacaccatctcagtatgatagcttgaat
cggatgggtattgtcactccgagaggagctgtgggcattggtacaaatgcttggaatggt
ggtacgaggccgatgatctatttgccaagtccatcgcagtccggctttcctggtcagtca
cctggtgttcctcggctgatgagaacgccgcagtttaccgttcctccaactcccagtgat
ccttatctgggtgcccagcaaccaccgccacctatatggccggcagtaattccgcctcca
gcgtag
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integrated database retrieval system
