KEGG   Trichinella spiralis: Tsp_02440
Entry
Tsp_02440         CDS       T01609                                 
Name
(RefSeq) WD repeat-containing protein 82
  KO
K14962  COMPASS component SWD2
Organism
tsp  Trichinella spiralis
Pathway
tsp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Tsp_02440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_02440
   03036 Chromosome and associated proteins [BR:tsp03036]
    Tsp_02440
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     Tsp_02440
Chromosome and associated proteins [BR:tsp03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     Tsp_02440
    COMPASS/SET1 complex (yeast)
     Tsp_02440
SSDB
Motif
Pfam: Beta-prop_EML_2 WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz ANAPC4_WD40 WDR55 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_EML EIF3I Beta-prop_Vps41 Beta-prop_WDR90_POC16_2nd RMC1_N Beta-prop_VPS8 Beta-prop_ELP1_1st Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 10908105
NCBI-ProteinID: XP_003378190
LinkDB
Position
Unknown
AA seq 264 aa
MLSKVTFFDKDFLQKLILDLLKCYTVHLSKQILVVLFMKQTAIINDETVRRLVVTKRLKE
KEESINSLDFSPDGLVLATASDEDSINIYSINNASLKFSPCGNMIMLTTFDGNIYLLDGL
HGNLLHTLSDHVSDGSSFLEASFTKDSAYVFAGSCDGNVYVWKTDSGSKYIAMCGPNGEG
IHSQPVRCLRFNPKYWLMVTASSDLLLLLLTHNICSFVKFLTCRLFGLIEEAELNISTVT
SLSYANANATKKTVNLKIILFCFN
NT seq 795 nt   +upstreamnt  +downstreamnt
atgctttcaaaagttactttttttgacaaagattttttacaaaagctaatacttgattta
ttgaaatgctatactgtacatttatcaaagcaaattttggttgttttattcatgaagcaa
actgccattataaacgacgaaactgtgcgaagattagtagttacaaaacgtttaaaagaa
aaggaagaaagcataaatagcttagatttcagtcctgacgggcttgttcttgctacagct
tcagatgaagattctataaacatttactctatcaacaacgctagcttaaaattttcacct
tgtggaaatatgattatgcttaccacttttgatggaaatatatatcttcttgacggttta
catggcaatttgcttcatactttatcggaccatgtatctgatggatcgtcattcttagaa
gcttcttttaccaaagattcagcttacgtttttgcaggttcttgtgacggtaacgtttat
gtgtggaaaaccgacagcggttcaaaatatatagcaatgtgcggtccaaatggcgaaggc
attcacagtcaacccgtccgttgtttgcgctttaatccaaaatattggttaatggtgact
gcatcttcagatcttttattattattattaactcataacatttgttcatttgttaagttt
cttacttgtaggctttttggactaattgaagaagctgaactgaacatttcaactgttaca
tctttgtcatatgcaaatgcgaatgcaacaaagaaaactgtgaatctcaaaattatattg
ttttgttttaattga

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