Trichinella spiralis: Tsp_02501
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Entry
Tsp_02501 CDS
T01609
Name
(RefSeq) putative ubiquinol-cytochrome c reductase, iron-sulfur subunit
Organism
tsp
Trichinella spiralis
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ELL
UCR_TM
Occludin_ELL
RNA_pol_Rpc4
MARVEL
UBR1-like_wing
Rieske
Fe_dep_repress
Motif
Other DBs
NCBI-GeneID:
10903116
NCBI-ProteinID:
XP_003378825
LinkDB
All DBs
Position
Unknown
AA seq
1326 aa
AA seq
DB search
MTAASSEIFTLAQRDVNLPQLTAFVIKLTDSSLQSLQDSVRTCNGYAGSSSKSGSIEFQP
DDCRISFGPDAQAFKFTLSKVQDASSKGPQDAIEQCRDGGEWIKLGAVRHRIKVLATDDS
YHNIKKKALRAEEEAKKSALKVLKQPKEGVSKASEKIWNKVQDAMNASSKKGSVTSASSS
FQSSGSSQLVSPPRSNGHQRHQLSSSTSSSLPTKSRFDITKKSVRERIIHHLIIRPSTAS
GMLNRLLKEGLSDVDRQQFEATFNSVAQVRGGKSQSSTAGSGCVYDLQPQCFSEVSCDWP
FYTNYERQLVRRELNNGAQSSRGRNAYVIDDIIPKKESSRRSVISDVSSSARIPPKEQSF
SAGKKTTNGYPELTTHHRQANPHSASTTLQSRKRPADVDSQMPKPKKPPPIEQHVAVTSN
GYGHCSSEMGVSNHDSNGSPPSNCSFWKDFPSIDSDEQRRRYKQAFDNDYPEYISCYEQL
NQFYEEIAIMVNQLKQYDKNSDEYSQLERDICSKYHRWEEDKTIDEVRNRHYQLRLKLAV
LKARVQDYDDRKAIPMASRPPRLPLPGSSRGVTPRLPNSMPTRARPLPNLAKAGQRQTPN
VAQSLGSSSSAAAAASRTKTLTRANNNNNASPKAALPDNPRGSARGGNRFRGNMKSRLMT
SEGIFSEGFTNELEIKSASDVDHYGEVVVEESFKKEIPDETDEEALEKLFYKENVIADIY
FKIVKQFLIFSILQSEKLPTNFVTLLSSPVFVQLPCAIANVAQRMLDCVPLKEGNANSVE
NDLEKGRETHVLEKFPEGHLGKLQLHKSGKVTLKLNSAHSLPLLMPVQINSDNFVEKLVC
LHLNDNEPNGGTMDWLGTVKSRWIFRIQPEFFLHTESVKPLLLSFMQVAMKVVDFSRMNI
SKKLLYGITGNARHVELRKSGCVYGLNFSPARFNNRNVMSKFTAYQSVFVKGLFTGSSQR
YAHTDVTFPDFDEYRRDSTKDIKLRNEDTDVPRKMFSYLSLGVGTAATLYCTKTVALQVI
SYKGPPFSEEAGAVAEINLNLVPEGKNSTFLWRGKPVFVRHRTAKEINVESQVDISKLRD
PEHDHQRVQKPEWLIVLAPCTHLGCVPIRKLMMFFKIETCNILLHVYEIILAYAGDYKGY
FCPCHGSHYDASGRIRRGPAPRNLEVPHYVFKDENTVLIGKTQYLTNTAVSNDLCKQEGG
SISIFGEGADFVVTAVLAVFWFIASCAWASGVNVIKGLTDFSLIKNMFVNSVNPCKDKES
CHFTPHWNYAALNVSLIAGFACFFLFASNLWFIWKETEWFKSRQTPNVASGQTAGGYPAA
ADVLPR
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgacggccgccagttcggagatatttacgttggcgcaacgtgatgttaatttgccccag
ctgacggcatttgtcatcaaactgaccgatagcagtttgcagtctttgcaagattcagtt
cgaacgtgcaatggttatgcgggttcttcttctaaatctggttcgattgaatttcaaccc
gatgattgtcgcatttcatttggtccagatgcacaggctttcaaatttacactgtcgaaa
gttcaagatgcaagttccaaaggacctcaggatgcgattgagcagtgcagggacggcggt
gaatggattaagttgggagctgttcgtcatcgtatcaaagttttagctactgacgattca
tatcacaatattaaaaagaaagcgttgcgagcggaggaagaggcgaagaaatctgcactg
aaagtgttgaaacaacccaaagaaggcgtgtcgaaagcgagtgaaaaaatatggaataaa
gtgcaagatgcaatgaatgcatcttcaaaaaaaggatccgtcacttccgcttccagttca
ttccagtcatccgggtcatctcagctggtatcaccgccgagaagcaatggtcaccagcgt
caccagttgtcttcatcgacctcgtccagtcttcctacgaaaagtcggtttgatataacg
aaaaaatcggttcgtgaacgaataattcatcatttgattataaggccatccacggccagc
ggtatgctcaatcgattgctcaaagagggcttgtcagatgtggataggcaacagtttgaa
gcaactttcaactctgttgcgcaagttcgaggtggaaaaagtcagtcctcaaccgccggt
tctggatgtgtttacgatttgcaaccgcagtgcttttctgaggtgagttgtgattggcca
ttttataccaattacgaacgtcaactggtcagacgtgaattaaacaacggagctcagtcg
tctcgtggtcgcaatgcgtatgtaattgatgatatcataccgaagaaagagtcgagcagg
cgatctgtaatttctgatgtatcttcatctgcacggattcctcctaaagagcagtcgttt
tccgctggaaaaaagaccacaaacgggtaccccgaactgacgacgcatcatcgccaagcc
aatccgcactctgcttcaacaactctgcagtcgaggaaaagacccgctgacgtggattca
caaatgccaaagccgaaaaagccaccgccgattgaacagcacgttgctgtgaccagcaac
ggttatggtcattgttcgtcggaaatgggcgtttcgaaccacgattccaatggtagtcca
ccgtcgaattgcagtttttggaaagatttcccatcaatcgactctgacgagcagcgtcgt
cgttacaagcaggcatttgacaacgactatccggaatatataagctgctatgagcagttg
aatcaattttacgaggaaattgcgatcatggttaatcaactgaagcagtatgacaaaaat
tctgatgaatattctcaactggaaagggatatttgcagtaaataccatcggtgggaagag
gacaagactatcgatgaagtacgcaatcggcattatcaacttcgattaaagctcgccgtt
ctcaaagctcgcgttcaagattatgatgatcgcaaggcaattccaatggcatcaagacct
ccacgacttccgttgcctggttcatcgcgtggcgtgacacctcgtttgccaaattcgatg
cccacaagggcgaggcctcttccaaatttggccaaggcaggtcaacgccagacaccgaat
gttgcacagagtttgggttcttcttcttcagcagcagcagcagcatcaaggacgaaaact
cttaccagagctaataataataataatgcctccccgaaagcagcattgccggataatcca
cgtggatcagctagagggggaaaccgatttcgagggaatatgaaaagtcgactgatgaca
tcggaaggcattttttcagaaggtttcaccaatgaattggaaatcaaatccgcatcagat
gttgatcattatggagaagttgttgtggaagagtcatttaaaaaggaaattcctgatgaa
acggatgaagaagcgttggaaaaacttttttacaaagaaaacgtaatcgctgatatttat
ttcaaaattgtgaaacaatttcttattttttccattttgcagtcagaaaaattgccaacg
aactttgtaactcttctcagttcacctgtatttgtgcaacttccatgcgcaattgcgaac
gtcgcacaaagaatgcttgattgcgtgccactaaaagaaggcaacgcaaattcagtggag
aatgatttggaaaaaggtagagaaacgcatgtattggagaaattccctgaaggccatttg
ggaaaattgcaattgcacaagtctggtaaagtaacattgaaattgaactctgctcatagt
ttgccattgctaatgcctgtgcagatcaattcggacaatttcgttgaaaagttggtttgt
ttgcatttgaacgacaatgaaccgaatggcggtacaatggattggttgggaaccgtgaaa
agtcgttggatttttcgtatccagcctgaattctttcttcatacagaaagtgttaagcca
ttgttgttgtcattcatgcaggtggcaatgaaagtagtagattttagtcgtatgaacatt
tcaaagaagcttttgtacggtataactggaaatgcacgacatgttgaattgaggaaatca
ggctgcgtgtatggtttgaatttttcccctgcccgatttaacaatcgaaatgtgatgtca
aaattcacggcatatcagtcagtttttgtcaagggactttttactggttcatcccagcgt
tacgcgcatactgatgtcacgtttccggacttcgacgagtatcgtcgagacagtacaaaa
gatatcaagttaagaaatgaagacactgatgttccgcgcaaaatgttttcttatctgtct
cttggagttggtactgctgcaactttgtattgtacaaaaaccgtggcattgcaagttatt
agttacaaaggtccgccattttctgaagaagcaggagcagtagcagaaataaatttaaat
cttgttccagaaggtaaaaatagtacatttttatggcgtggcaaacctgttttcgtgcgt
catcgtacggcaaaagaaataaatgttgaatcacaggtggatatttccaaactgagagat
ccggagcatgatcatcaacgagtgcaaaagccggaatggttgattgttttggctccttgc
acgcacttgggttgcgttcctatacgtaaattgatgatgttctttaaaatcgaaacgtgt
aacatcttactgcatgtgtatgaaattattttagcctatgctggcgactacaaaggatat
ttttgtccttgtcatggttcgcattacgatgcttcggggcgaataaggcgtggtccagcc
ccgcgtaatttagaggttccgcattacgtgttcaaggatgaaaataccgttcttattgga
aaaactcagtacttaactaacacagctgtatcgaacgatttgtgcaagcaagaaggagga
tcaatatctatttttggcgaaggggctgattttgtggttactgccgttcttgctgttttc
tggtttattgctagctgtgcatgggcatctggtgtgaatgtgatcaaaggcttaaccgat
ttcagtttgatcaaaaatatgtttgtgaacagcgtgaacccttgtaaagataaagaaagt
tgtcattttacaccacattggaattacgctgctctgaacgtttccttgatagctggattt
gcttgctttttcttgttcgcctcaaacttatggttcatttggaaagaaacggaatggttt
aaatctcgtcaaacaccaaatgtagcttccggtcaaacagccggcggttaccctgctgcg
gctgatgtactaccccgttaa
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