Trichinella spiralis: Tsp_02559
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Entry
Tsp_02559 CDS
T01609
Name
(RefSeq) putative RecF/RecN/SMC N domain protein
KO
K06636
structural maintenance of chromosome 1
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_02559
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
Tsp_02559
Meiosis-specific proteins
Cohesin complex and associated proteins
Tsp_02559
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
Glycos_transf_2
Ricin_B_lectin
AAA_23
AAA_21
AAA_15
AAA_29
Glyco_transf_7C
RicinB_lectin_2
Glyco_tranf_2_2
DUF1482
ABC_tran
Motif
Other DBs
NCBI-GeneID:
10898852
NCBI-ProteinID:
XP_003378885
LinkDB
All DBs
Position
Unknown
AA seq
1819 aa
AA seq
DB search
MGFLREIELENFKSYKGYQRIGPFKKFTAIIGPNGSGKSNLMDAICFVLGEKTSSLRVRK
ISDLIYGAPVGKPISTRCYVAMTYEDDDGRILKFMRLVAGASAEYRIDGATVSHLQYTEA
LESINIFIRAKNFLVFQGAVENIAMKNPKECTLLFEEISRSGELKAEYETLKAEMMRAEQ
DTQLNYHRKRDIAAKRRAAKMEKEEAEKYQKLKDSVAEKQSRYYLMKLFSNDRESKRIFG
EMNGKHGEQSRIATKCSEVEEVLKERRKVYSKVTREVNKLEQQIYEMVQFLLPIGKNESE
ITREKPSFIKVKENVRHSERKLEAFHKAFEAARKNAERQQEVIRQFEVQLKEANEQRDAF
EAQLTQESESQGLQLDSEQLAQYNSLKGEVVRQCASIQQELDVLAREQQMDQELLDNDKR
CNGEFCQKIKQKESELEALKKRLEKLVDTIKNTENEIEEQRSSLRSTEDEVRTAKTRLEQ
VIVEVEDVNRQLNDANVDSSENSRIVKKQELVENLKRISTGTVYGRVVDLCQPAHKRYQL
AVTKILGKYMNAIVVDTEKTAKECIQYMKEQRIESETFLPVDYIDVKPLNEKLRELREPR
NVKLIFDVIQFEPPQIRRVVQFACGNSLVCESVEDARNLAFSGAERHRAVALDGTVFEKS
GIISGGAGDLKAKAKRWDEKAVAHLRSRKSALIEEQKELHRIRRKEPDISLMQNSVKQLE
TRMKYMLTDKENTETRLLKNLESDLMQLKAETDKYGPRIQEIENRMASRRSNILQNQSRM
NQVADHVFADFCKSIGVLNIRQYEEREIRFQQDKKQKMMEFDNQIEKLKNELEYQKSDDK
SGTVISAGIAELAQLEKIEASCNKEERELIKAKKEEQEHIRLLADLESQLKDLKAMRQTK
KVELENKEAELNEVKKELATIQKELLSVQKQTSAMETLLEQKRSERHSLLQTCKLENITL
PIIRGSLDILSTTASSQSSDTTSSVVSEDGATTLSSTSFMGNRQLYQLEAEITFDFSSLN
PDDWELSDDTELRLAAEKLLKEIGETQAFLQTITAPNLKASAKLEGVRERFAETSGEFEQ
ARKKAKNAKMAFEIIQKERCSRFNRCFDQVSGKIDEIYKALSRNFSSQAYLTADNPEEPY
LDGVSFSVVAPGKRFRPMDSLSGGEKTLAALTLLFAIHSYNRAPFFVLDEIDAALDNTNI
GKVAAFIREQAANNMQLIVISLKEEFYNQADALIGIYSVVCVYMFWHILFLEFNGIPMNS
LLFLSLRNAPVSYSKDWHNYTQMMLDRARRGKKISFYPGVGEHGNPVELPSSVAEKAEFD
RLYKANGYSGWTSDKISLYRAIKDLRHVDCKRKSYLRLLPSTSVILPFHNEHLSVLLRTV
YTIVYRTPPELLLEVILVNDASTKPELNDILERHVQRKFPNLVHVIRAGSDGRREGAAKA
SGQVLMFMDAHSEVGYNWLPPLLEPIKLHYRTVTCPFIDVIDCDTFAFRAQDEGARGSFD
WKFHYKRLPLLNKTGAEPFESPVMAGGYFAISKRWFDELGRYDDQLMIWGAEQYELSFKL
WQCHGRMIDIPCSRIAHIYRCKFGFAALFSTVHRYAPFEDPGIGNFLERNYKRVAETWMD
EYKEYLYLRMPRLRNVDPGDLTKQREVRQRLKCNGFDWFMKNVMFDQPKHYPLVEPPDVM
SGRIKNKRTGRCMDVKNAGLQTELTTSQCKDYLKRQEFVLTWRSEIFQRLGENCLDSMNH
GPGETVHLFACHGGGGNQNWTYSRNTTMHLQMTASNLCLDTDNTGRLFLNTCQLFCFCGG
SGKTRCMCNGVDLFIFSIC
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atgggttttttgcgtgaaatagaacttgaaaactttaaatcttacaaaggttaccaaaga
attgggccgttcaaaaaattcactgcaatcatcggcccaaatggatcaggaaagtccaat
cttatggatgcaatttgctttgttctgggtgaaaaaacttcgagcttacgtgtcagaaag
atcagcgatttaatttatggtgcacccgttggaaagccaatcagtacaaggtgttacgta
gcgatgacttatgaagatgatgatggccgtatcttgaaatttatgcgtcttgtagctggt
gccagcgcagaatatcgtattgacggagctactgttagccatttgcaatatactgaagcg
ttagaaagcatcaacatatttatccgtgcaaaaaattttctcgtatttcaaggtgctgta
gaaaatattgctatgaagaatcccaaagaatgtactttgttatttgaagaaatatcaaga
tctggggaattgaaagctgaatatgaaacactgaaagcagaaatgatgcgagcagagcag
gatactcagttgaattatcacagaaagcgtgatattgccgcgaaaaggcgtgcagcgaag
atggaaaaagaagaagcggaaaaatatcaaaaactcaaagattctgtggcggaaaagcag
agtcgttattatttgatgaaactgttcagcaatgatcgagaatcgaaaagaatttttgga
gagatgaatggcaagcatggcgagcaaagtcgaattgcaaccaagtgcagtgaagttgag
gaagttctgaaagagaggcgaaaagtgtacagcaaagttactcgtgaagtcaataaattg
gaacaacaaatttacgaaatggtgcaatttttattgcccattggaaaaaatgagtctgaa
attacacgcgaaaagccgagcttcatcaaagtgaaggaaaatgtacggcattcggagaga
aaattggaagcatttcacaaagctttcgaagctgctaggaaaaatgccgaacgtcaacaa
gaagttatacgccaatttgaagtacaattgaaagaagccaatgaacaacgagatgctttt
gaagctcagctaacgcaagaatctgaaagtcaaggtctgcagctggacagtgaacaactt
gctcagtacaactctttgaaaggtgaggtggttcgtcagtgtgcttctattcaacaagag
ttggatgttctcgcgcgtgaacaacagatggatcaagaattgttggacaacgataaaaga
tgcaatggtgaattttgtcaaaaaattaagcaaaaagaatccgaattagaagcgttgaaa
aagcgtttggaaaaattggtcgatactatcaaaaatacggaaaatgaaattgaagagcaa
cgatcaagtttacgttctactgaagatgaagtgcggacggcgaaaacgcgtctagaacaa
gtgatcgtcgaagtggaagatgtaaatcgtcaactgaatgatgctaatgttgatagttct
gaaaattcacgaattgtgaaaaagcaagaacttgtggaaaatttgaaacgcatctctact
ggaacggtgtatggaagagttgttgatctttgtcagccagctcataaacgttatcagttg
gctgtgaccaagatattgggtaaatatatgaatgcgattgttgtggatactgaaaaaacc
gccaaagaatgcatccaatatatgaaagagcaaagaatcgagtcggaaacatttttacca
gttgattacatagatgtgaaacctttgaacgaaaagcttcgagaacttcgtgaaccgcgc
aatgtgaaacttatttttgatgtaattcaatttgaaccaccgcaaataaggagagttgtc
caatttgcatgcggcaactctctcgtctgcgaatctgttgaagatgctcgaaatttggca
tttagcggagctgaaaggcacagagcggttgctttggatggtactgtttttgaaaaatct
ggtatcattagcggaggcgcaggcgatttaaaagccaaagcgaaaagatgggatgagaag
gcggtggctcatttgcgaagtcgtaaatccgctttgattgaagaacaaaaagaattgcac
cgtatacggcgaaaagaaccggatattagcttgatgcagaacagtgttaaacagctcgaa
acccgcatgaagtacatgttaacggataaagaaaatactgaaacgaggttgttaaaaaat
cttgaatctgatctgatgcaactgaaagctgagactgataaatatggtcctcgtattcaa
gaaattgaaaatcgcatggcttccaggcgaagtaacattttgcaaaatcagtctcgcatg
aatcaggtggctgatcatgtttttgctgacttttgtaaaagtatcggtgtgctgaacatc
cgtcagtacgaagagagggaaattcgttttcaacaagacaaaaaacagaaaatgatggaa
tttgataatcagattgaaaagttgaagaacgaacttgaatatcaaaagtctgacgacaaa
agcggtactgtcatttctgccggcattgcagaattggcacagctagagaaaatagaggcg
agttgcaataaagaagagagagaattgatcaaagcgaaaaaagaagaacaagaacatatt
cgacttcttgccgatttggaatcacagttgaaagatctgaaagctatgcgtcaaacgaaa
aaagtagaattggaaaataaggaagctgaattgaacgaggtgaaaaaagagctggctact
atacagaaggaattgctttcagtgcaaaagcagacgtcggcaatggaaactttactagag
cagaaacgttcagagcgacattctttgttgcaaacttgcaaattggaaaacatcacattg
ccaataattcgtggttctttggatattctcagtacaactgcttcgtcacaatcctctgac
acaacaagcagcgtcgttagtgaagacggtgcaacgacattatcatcaactagctttatg
ggaaatcggcaactttaccaacttgaagcagaaattaccttcgatttcagttcattgaat
ccagacgattgggaactctctgacgatacggaattgcggttagcagcggaaaaattgctt
aaagaaatcggtgaaactcaggctttcttgcaaactatcacggcaccgaatcttaaagcg
tcagcaaaattagagggggttcgtgaacgttttgccgaaacttcaggggaatttgaacag
gctcgaaagaaggcaaagaatgcaaaaatggcatttgaaataatacaaaaagagcgatgt
tctcgattcaatagatgttttgatcaagtcagtgggaaaatagatgaaatttacaaggct
ctgtctcgtaatttcagctctcaagcttatctcacagcggacaatcctgaagaaccatat
ttggatggtgtttcgttcagtgttgttgcgccgggcaagcgatttcgcccgatggatagt
ttgagtggaggtgagaagactttagccgcactgacgttgctttttgcaatacattcctac
aatcgcgcgccattttttgtactggatgaaatcgacgcagcactggacaataccaatatt
ggaaaagtagctgcatttattcgtgaacaagcggcaaacaatatgcagctgattgtgatt
tctttgaaggaagaattctacaaccaagcggatgcgttgattggaatttattcagtggta
tgcgtttatatgttttggcacattttatttttagaattcaatggtataccgatgaactca
ttgctatttttgagtctcagaaatgctcctgtgagttattctaaagactggcataattat
acgcagatgatgctcgatcgcgctcgtcgtggtaaaaaaatttcattttatccaggtgtc
ggtgaacatggtaatcctgtggaattgccgagcagtgtggccgagaaagctgaatttgac
cgattgtacaaggcaaatggttatagtggatggacgagcgataaaatttccttgtacaga
gctataaaggaccttcggcatgtggattgcaaacgaaagagctatttgcgcctgctgccg
tcgacatccgtcattttgccatttcacaacgagcatttgtcggttctcttgcgcactgtt
tataccattgtttatcgaacaccacctgagctgttgttggaagtgattttggtgaacgac
gcgagcacaaagcccgagttgaatgatatactggaacggcatgtccaaagaaaatttcca
aatttggtgcatgtgattcgagcaggctctgacggtcgtcgagaaggggcggcaaaagct
tccggtcaagttttaatgttcatggatgctcacagtgaagtcggttacaattggcttccg
ccattgttggaaccgatcaaactgcactatcgtacagtgacgtgtccatttattgacgta
attgactgcgacacgtttgcattcagagcccaagacgaaggtgcccgtggttcgttcgat
tggaaattccattataagcgcttacctctgttgaacaaaaccggcgctgaacctttcgaa
agtccggtaatggccggcggctattttgcgatcagcaaacgttggtttgacgagctaggc
cgctatgatgaccagctgatgatttggggtgcagagcagtacgaattatctttcaagttg
tggcagtgtcacggcagaatgattgacattccttgttcgcgtattgctcatatatatcgt
tgcaaatttggttttgctgcattgttttcgactgttcacagatatgcaccattcgaagac
cccggcattggtaattttttggaaagaaattacaaacgggtagctgagacttggatggac
gaatacaaagagtacttgtatttgcgtatgccgcgtttgcgtaacgttgatcctggtgat
ttgactaaacaacgtgaggtcagacaacgtcttaaatgtaacggattcgattggttcatg
aagaacgttatgttcgaccagccgaagcattatccactggtagaaccaccggatgtgatg
tcgggtcgcatcaagaataagcgtactggtcgttgtatggatgtgaaaaatgcggggttg
caaactgagctaacaacctcgcagtgcaaggactacttgaagcgtcaagaatttgtgctc
acttggcgttcagagatttttcaacgactcggagagaattgtctcgattcgatgaaccac
ggtccgggagagactgttcatttgttcgcgtgtcacggaggcggtggaaatcaaaattgg
acatacagccgtaatacgacaatgcacttgcaaatgaccgcatccaacttatgtttggat
acggataacactggcagactttttcttaacacttgccaactattttgcttttgtggaggc
agtgggaaaacacgatgtatgtgcaatggcgtggatttattcatcttttcaatttgttga
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integrated database retrieval system
