Trichinella spiralis: Tsp_02577
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Entry
Tsp_02577 CDS
T01609
Name
(RefSeq) putative PDZ domain protein
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tsp04121
]
Tsp_02577
Enzymes [BR:
tsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
Tsp_02577
Ubiquitin system [BR:
tsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
Tsp_02577
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
LAMB4
CLZ
Motif
Other DBs
NCBI-GeneID:
10898870
NCBI-ProteinID:
XP_003378903
LinkDB
All DBs
Position
Unknown
AA seq
633 aa
AA seq
DB search
MNTLCKRLFSKCKEVTLKRHSAKQKLGLTLCYGSVDDTQTDIFISEVQNASLAHLDGRFR
TGDQILQINGVDVHSRSQAIELFSQDCPSVTLLLARRRNVSSSDCSEHHHHQATDSDPDI
LPATLSSPSKYSELSTGSGSLSSGSSSMKQRCGDDGSAVQVEVDEGLIADCRQVEEEAST
GRDSKKVSTGVDSTTSLERELQYLHQEMEHIQLECDRLIEQHAKAERRMHKQLQDASRLA
ASIEHLQNQPKLQRPVHAPVLLPNGSSSPSVRHGNAVSSVRRSPIVTSATTSTNANNSIG
SKPKTSITRFPKIAQLTAENLRRSIRFRRDDPPSSVYNNANVDVCRGSAASKPTHCMLIR
KVPAEEDGKRDSAFFTLPHNEQQYHNSAANSRDDGGKFALKCTSPDEHIYASISGDTVYT
NLENLNSTIAQQQKHFHKAVVEQARQLKIHQRQQRQFYSAGQVHKNLITGEPSCRIPACR
QNLHRAAKESTTNTEWKVKRRPDGSRYITKKPVRKQILKERAERLANERFGCSTDDDAMS
ELKVGRYWSKDERRRHLEKGKERKRRQEELLRRKAEQKPPNEQQIVQLSYKKMLRRQGQQ
LLDRFTTVQEFLAHGNRTAENYRALGLLSVTTV
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgttgtgcaaacgacttttctccaaatgcaaagaagtgacactgaagcgtcat
tcggccaaacagaaattgggcctgacactctgctatggttctgttgacgatacacaaaca
gatatcttcatcagtgaggtgcaaaatgccagcctggctcatctagacggacgttttcga
accggtgaccagattttgcagataaacggtgttgacgtgcattcaagaagtcaagcaatt
gaactgtttagccaagattgtccaagtgttacactgctattggctcgccgacgtaacgtt
tcatcctctgattgtagtgagcatcatcatcatcaggcaaccgactcagatccggacatt
cttccggctacattgtcgtcaccgtcgaaatattctgaactttccacaggtagtggaagt
ctttcctctggaagttcatcaatgaagcaacgatgcggagacgatggatcggctgtacaa
gttgaagttgacgaaggtcttatagctgactgtcgacaggtcgaagaggaggcgtcaact
ggaagagattcaaaaaaagtttccaccggcgtcgactcaactacaagtttagaaagagaa
ttgcaatacttgcaccaggaaatggagcatatccagctcgagtgtgatcgactgattgaa
cagcacgcaaaagcggaaagaagaatgcataagcagttgcaagatgcttcgcgcctggct
gcttcaattgaacatctgcaaaatcagccaaaattacaacgccctgtacatgctccagta
ttgctgccgaacggatcgtcatcaccatcagtaagacatggaaatgcagtatcatcagtt
cgtcgatcaccgatcgtcacttctgcaactactagtacaaatgcaaataatagtattgga
tcaaagccgaaaacatcgatcacaagatttccaaaaattgcccaattgactgcagaaaat
ttacgccggtcaatcagattccgacgagatgatcctccatccagtgtttacaataatgcc
aatgtagacgtttgtcgtggttcagcagcgtcgaagccaacccactgcatgctgatcaga
aaagtgccggctgaagaagatggaaagcgtgattcggcttttttcacattaccccacaac
gaacaacaatatcacaatagtgctgctaacagccgtgatgacggtggcaaattcgctctg
aaatgtacatctcctgatgaacacatctacgcttcgataagtggagatacagtttacacg
aatttggaaaatttaaatagcaccattgcgcaacagcagaaacactttcacaaagcagtt
gtcgaacaggcgagacaattgaaaattcatcaaaggcaacaacgtcaattctattcggcc
ggtcaagttcataaaaatttaattactggtgaaccatcatgccgtattccagcatgtcgg
caaaatttgcatagagcagcaaaagaatcgacaactaatacagaatggaaggtaaaacgc
cgaccagacggttcgcgttacatcacgaaaaagccggttcgaaaacaaattctcaaagaa
cgtgctgaacgtttagccaatgaacgttttggttgtagtaccgatgatgatgcgatgagt
gaattaaaagttggtcgatactggtccaaagatgaacgtcgtcgacatttggagaaaggc
aaagagcgaaaacgtcgtcaggaggaactgcttagaagaaaagcggaacaaaaacccccc
aatgaacagcaaattgtacaactttcatacaagaagatgcttcgtcgtcaagggcaacag
cttttggatcgtttcactacagtgcaagaatttttagcacacggtaaccgtacggctgaa
aattaccgagcattgggtctcctttccgttactactgtctga
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