Trichinella spiralis: Tsp_02632
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Entry
Tsp_02632 CDS
T01609
Name
(RefSeq) putative ATP-dependent RNA helicase Pl10
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_02632
03041 Spliceosome [BR:
tsp03041
]
Tsp_02632
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_02632
Enzymes [BR:
tsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tsp_02632
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
Tsp_02632
mRNA cycle factors
Common to processing body (P body) and stress granule
Tsp_02632
Spliceosome [BR:
tsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
Tsp_02632
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
Tsp_02632
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
10899087
NCBI-ProteinID:
XP_003378958
LinkDB
All DBs
Position
Unknown
AA seq
552 aa
AA seq
DB search
MDSMANWQCGGPQPPKNYSRGYGRMPDNRGNFYPPNQYDSMPPGGNRNMRRKELFGSGNT
GINFDKYEEIAVEATGQNVPACIQKFSELNLHPWIMDNIRLCHYDKPTPVQKFAIPTALE
NRDLMACAQTGSGKTAAFLLPILHHILSGGPEMLRKSDTAPNGRRRLYPAALVLAPTREL
TLQIFNEACKFSYRTPIMSTILYGGRENYRDQINKLRIGCHLLVATPGRLNDVMNQGYIG
LDACRFLVLDEADRMLDMGFEPQIRQIVEMSGMPRRSHRQTMMFSATFPHEIQMLAQDFL
VPDYVFLAVGRVGSTSENITQKLVWVEDYDKRAFLLDLLNASSPETLTLIFVETKRGAAD
LAYFLSGERYSVVAIHGDLKQFEREQHLESFRSGNTPILVATAVAARGLDIPNVKHVINY
DLPSEIDEYVHRIGRTGRVGNIGLATTFFNNKNKNMARDLAELLVEANQELPDFLERMAR
ENPRGTQHGNRSRNQRNFGGRDFRDQYRSGGGNAAMHNARAFIADGSAKARKCRRTLEAA
NIFTFICIYLYA
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggattcgatggcaaattggcaatgtggaggaccgcaaccacccaagaattattctcgt
ggttatgggcgaatgccagataatagaggaaatttttatcccccgaatcagtacgacagc
atgcctccaggtggaaataggaatatgagacgcaaagaattgtttggaagtggaaatact
ggcattaattttgataagtatgaagaaattgcagttgaagcaactggtcagaatgttccg
gcatgcattcagaagtttagcgaactgaatttgcatccgtggataatggacaatattcgt
ctttgtcactacgacaaacctactccggtgcagaaatttgcaattcctactgctctggaa
aacagagatctaatggcctgtgctcagacaggttctggaaagacagctgcttttttattg
ccaattttgcatcatattttgtccggaggaccagaaatgcttcgcaagtctgatacagcc
cctaacggtcgtcgccgtttatatccagccgcgttagtgttagcacctacacgtgaattg
actttgcaaatcttcaacgaagcttgtaaattctcttatcgcactccaataatgtctaca
atattgtatggtggtcgagaaaattacagagatcaaataaataaattaaggattggttgt
catttgctcgtagcaactccaggtcgtttgaatgacgttatgaaccaaggctatattggc
ttggacgcttgccgatttttagttttggacgaagcggaccgcatgctcgatatgggcttt
gaaccacaaattcgtcagattgtagaaatgagtggcatgcccaggcgatcgcatcgtcag
acgatgatgttcagcgcaacatttccgcatgaaattcaaatgttggcacaagattttctt
gttcctgattatgtgtttttggccgttggtcgagttggttctacatcggaaaatataacg
cagaaattggtctgggtggaagattatgacaaacgagcgtttctgttggatttgttgaat
gcatccagtccggagacgttaacgctgatatttgtggagacaaagcgtggcgccgcagat
ttggcttattttttgagtggagaacggtacagtgttgttgcaattcatggtgatttgaaa
caattcgaacgtgaacaacatctcgaatcttttcgctctggaaatacgccaattctagtt
gcaactgctgttgcagctcgtggtttggacataccgaatgtaaagcacgtgatcaattac
gatttgccttcagaaattgatgaatacgttcatcgcattggccgtactgggcgtgtaggg
aacataggtctggcgaccacctttttcaacaataaaaacaaaaatatggctcgagatctg
gctgaactgttggtagaagcaaatcaagagttgccagattttctggaacgaatggctcgt
gagaatccacgtggtacgcagcatggaaatcgtagtcgaaatcaaagaaatttcggcggt
cgggactttcgagaccagtatcgttctggtggcggcaatgcagcaatgcacaatgctcgt
gcatttattgccgacggaagtgcaaaagcgagaaagtgtagaagaacactggaagcagct
aatatatttacgtttatatgtatttatttgtatgcgtag
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