Trichinella spiralis: Tsp_02704
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Entry
Tsp_02704 CDS
T01609
Name
(RefSeq) putative beige/BEACH domain protein
KO
K22262
WD repeat and FYVE domain-containing protein 3
Organism
tsp
Trichinella spiralis
Pathway
tsp04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
Tsp_02704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsp04131
]
Tsp_02704
Membrane trafficking [BR:
tsp04131
]
Autophagy
Aggrephagy
Scaffold proteins
Tsp_02704
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beach
FYVE
PH_BEACH
WD40_CDC20-Fz
NBCH_WD40
WD40_Prp19
WD40
Beta-prop_IFT122_1st
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Laminin_G_3
Beta-prop_EML
WDR55
EIF3I
DUF4800
FYVE_2
Motif
Other DBs
NCBI-GeneID:
10899323
NCBI-ProteinID:
XP_003379032
LinkDB
All DBs
Position
Unknown
AA seq
2971 aa
AA seq
DB search
MLYSLSFLLSSNKNCIVESACKTSLPSTLVKSLYLFCDLPKTCPLDEDQVRTLRGTLMKT
MTVMLRNPRGIEQMASKDDLVLLFCGVSSWCPVFNHTWRNCSAELLMTISSGVRSLLLIN
YIHTHKCIELFVDNLKHSTQETIPDMVEMICCLLCILKDFASVSSLLLDDFENADGYKFL
GDLRQNEQDSLRNLLFLVNSVVSAGCDEIKLPEVQNPWKTSRPFHMPQPLGEGRTVRNMK
AFELLETVFIHSRQTYICCTILDVLYSMLTADPVNYFILENRCPLGKFLETLSTKSLKVQ
RKLFDLIEYVVFQLNYLPSKEFIAIGPVLKMNKLYCGLFYLDCALELDMASIHLILGSLF
KILTYNPAVKDVFREVGLLDFNCCAEPNEQLWDTFTLTINTLCLLVKQCNANVVLVREIG
GTKTVFAMVEDDCCRPLALKLLQHIMMNPSGEDELAGVLALLHSPTDNPISLKSDVLQVK
FNSLTDSLHLLGCFSEKRSFSVIPVKKGIAELRVDFLSTLCDIFNVAADEKLSFPEGDLS
ENVVVICAILRLLYDMAFDRSDRNGKVIEFSSEQPAHSPNMISYRFASLIGQNAFVVHTG
AVMCMFELLLYVEQPNPMETLNVQLFIIEMVKSILRTERNQQVMCCVGLPRLLFDTVSDV
FFEEEHPLLPPCYYILERLAAQGMTPNELRSFLRLDKPWCCADLDSDEPSGSNVVALNRV
KTLVSMMTPKDLRLSLLNASPPFVEFDMSIEGFGCIFLPSIAPVGFGFVTGGLPLMHSNS
QDGAVMNRGGLGNGERIFPPLAGLTYMCWVYVERFSESGPDAHPLRLLTVYRTLASSHSH
VGQPCHHQSRSLEPSTPPTLQGNSEIACLQMQISPVDRSLIIATYETDTPGADLDKDVGN
ADGFVRLGIEELRRDRQWNHLAVVLNRSVLKSSTVTVYVNGQQKASQRIQYVSHWPTMGT
GAVASSLTTPQTCTVNALIGTAPGPFRKQSSLLWRLSGAYLVEEAMSSQAVGQAYELGPH
YTGSFQSPSSFLGRPMASLVTEERVSFGLHATAMSTMTLARLRKIYNKQDSRAIGKLLGI
SSHENITPVRLIHNSTVHLGGPARTLGGVLVGYLGMRTFCAKSSAKLLETVGGIACVLGL
VSMADDTESLYAAIKALFFALKTNRALNSEMEKIHGYQFVYRFGQFIIATLQIKETSNIE
KSLPNDIQDLQALLCEQICKVLGFDWILALFYGSNHKGTVRAGLQILLTIAKHSTLLNRF
KEGVGNGGWLTDAESVVQNRAGVLLGFSVSARGSSVGSSCDLNLEICNLAGFVALQYLLP
GHASLAETQIACASLLVGHSARHLPTAHAQNVESIWSLIFNNAGEQAVVTGAMGKLDLCP
EASLPLLSVVRACVASNEFARAECSEQNAVTLIQFVAFLYQNNSEFSNYAQTSDFVVALA
STLLRPNSKCRNNIEEETVRLTLPNHPAVRHVLELLSSIAVDGFLSGQPNKHESVIDILL
GPVQQNTNTVEEFRPLVTAFLLNTMDRLEATDVLARGVGVPMSSPAAPCTNYSILAANIF
YFAGKVVYCLWNDLFDGDPQSVFEFILKLFAQVKRKSGPGVPLDALYSSWNRCILFLLSR
VLDDMKAQRTVVECLQKITANRALLFSTANGEPEFFCCLAHLLFMLSDVGGLQPQHKLNN
ETEKEEMEQRRLYDGRKLVSANAKRVWEELFLAKKQLLEETLGVTIMPDVGASRAFASAA
ASQQWLNFVDNEMKGCYGAKDALQIHIQLQSKLHMVTGGLQRLASKKNIKSTGTARQTVV
SKQWHEHTKKWCLDEWTNLKQELTRERGLWGPKNPSVLNKYMLDSTEDVNAQMIKNTIKR
SATSVSSADGDRDEANGTASSSDEPISINDDVAVDDTASSSVFSDSPQARPRDGSSFSSS
TLCSSASVASEQPERLFLPKEPDSQTLLRLLEEGEELNSMYRCARICGLDSSEGLLLFGK
YHYYVIDGFTLLKTREIRDLDFLPEELHDPIVPYIASGATRNRSQKRLCSKFAYEDIREC
HKRRYLLQPIAIEVFSSDGRNHLLAFPRKIRDKIYAKLLACAKSLTDAGHQSVSGQKSGV
DVEQGAGLLAVLMGEMSVTQRWVRGEISNFQYLMHLNTLAGRSYNDLSQYPVFPWILSDY
DSEELDLANPNTFRDLSKPMGAQTPARLEQFLKRFREWDDPSGETPPYMYGTHYSSAMIV
VSYLVRVEPFTQQFLKLQGGHFDLADRMFHSVKDAWLSASRNNMADVKELVPEFFYLPNF
LLNSNHFELGVKQSGLRLGDVILPPWAKGDAREFVRLHRQALESDYVSAHLNQWIDLIFG
YRQQGQAAVDAFNLFHHLFYEANVNFEAIEDPLTKNATIGFINNFGQIPSQLFKKPHPVK
RSLKSTLPLQHSISSNAACAVAQQGVEGPTAAGPLFYHVAENLKPPLQPLRELKQAVGHM
AQNDKGALLAVEQNKVLVPPQFHRYLAWGFPDNSIRLGSSDFDKSVCIHESPHWGDVICA
SCPNAHTAVTGSTCSVVCVWEIVGAASRNQPAHLELRKRLYGHTEPVSCIYASTNFGVIV
SGSRDRTCIVWDLSKLSFIRQLGPHAGPVSAVSVNEATGVIASCSGTHLHLWSFDGQKLA
WVNTADSCKKSDMNEIIITITFSLLNEWDSQHVVAVGTNTGIVKLWTVKFVKVFDDCSHV
GRISSKSSSRSCCALFAAEPERDSHCDMDHVAVETFSNNDHCDRSTNDKVSFTLGNSNSH
SSEDDEQDSDAAFVDEGVSKVLPTSSCAEVVKSRNSEMVDIRRRSSESTMQKSSEGGNCC
GDGEPQRKFHWERQLVFRGKLTMHTAFERKDNPAPAAVTALMPSKDHKALYVGDGRGRVW
MWTVGDGHNGGRADHWVQDPSRNLCSNCHQKFTLTDRRHHCRNCGQLFCSRCSRFESEIR
HLRIRRPVRVCQSCHARLKATDDSQSSNHAS
NT seq
8916 nt
NT seq
+upstream
nt +downstream
nt
atgctttactcgttgtcgtttctgctatccagcaacaaaaactgcattgtggaatcggct
tgtaaaacgtccttgccgtcaactctcgttaaatcgttgtatttgttctgcgatttgccc
aaaacttgcccattagatgaagatcaagtacgaactcttcgtggaactttgatgaagacg
atgactgtaatgctgagaaatcctcgtggcattgaacaaatggcttcaaaagatgatttg
gtattacttttttgtggggtgagttcgtggtgtccggtatttaatcatacgtggagaaat
tgctcagctgaactgctgatgacgatttcgtctggagttcgttctttacttttgatcaat
tatattcacactcacaaatgtatcgaattgttcgtcgataatttgaagcacagcactcag
gaaaccattcctgacatggtggagatgatttgttgcttgctttgcattttgaaggatttt
gccagtgtatcatctttattgcttgacgatttcgaaaacgcggacgggtataaattcctc
ggcgatctcaggcagaatgaacaagattctttacgaaatttactattcttggtcaattct
gtagtttctgctggctgtgatgaaatcaaattaccagaagtgcaaaatccgtggaaaact
tcgcgaccgtttcacatgccacaaccacttggagaaggacgaaccgttcgtaacatgaag
gcgttcgaattgttggaaacagttttcattcacagtcggcagacttacatttgctgcaca
atattggatgtcttgtacagcatgttaactgctgatcctgtcaattattttattttggaa
aaccgttgtccgttgggcaagttcttggagactttatcgacgaaaagtctcaaagttcaa
agaaaactgtttgatcttattgaatatgttgtatttcaattgaattatctgccatcgaaa
gaattcattgctattggtccagtgttgaaaatgaacaagttatattgcggtttattctat
ttggattgtgctcttgaattagacatggcttcgatccatttgattctcggttctctgttt
aaaattctaacctacaatcccgcagtgaaagatgttttccgtgaagtgggcttgttggac
ttcaattgttgtgcagagccgaatgaacagctttgggatacgttcactttgacaatcaac
acgctctgtcttttggtcaagcagtgcaatgccaatgttgtacttgttcgagaaattggt
ggtacgaagactgtttttgcaatggttgaagatgattgctgtcgacctctcgcattgaag
cttttgcagcacattatgatgaatccaagcggtgaagatgaattggctggagttttggct
ttacttcattcgccaactgacaatccaatttcattgaaatcagacgttcttcaggttaaa
tttaacagtcttactgatagtttgcatttgttgggttgtttttctgagaagagatcgttt
tccgttattccagtgaaaaaaggcatagctgaactccgtgttgattttctcagcacttta
tgcgacatttttaacgttgctgcggatgaaaaattatcttttcctgaaggagacctttct
gaaaacgtggtcgtaatttgcgctattctgcgattgctctacgacatggcttttgatcgt
tctgacagaaatggtaaagtgattgaattttcgtcagaacagccagctcactcgccgaac
atgatcagttatcgatttgcatctttgattggccagaatgcatttgtagtgcacactggt
gcagtgatgtgcatgtttgaattgttgctttacgttgaacagcccaatcccatggaaact
ttgaatgttcaacttttcatcattgaaatggtcaagtcgattttacgaaccgaacgaaac
cagcaagtgatgtgttgcgttggcttgccaaggctgctgttcgacacagtgtcggatgta
ttttttgaagaagagcatcctctactgcctccgtgctattacattttggaacgcctggcc
gcgcaggggatgacgccgaacgagttgcgcagctttttgcgccttgacaagccgtggtgt
tgtgcggatctggattcggacgagccttccggaagcaacgtggtcgcgttgaatcgtgtg
aaaacgttggtctcgatgatgactcccaaagatttgcgtttgagcctgctgaacgccagt
ccgccgtttgtcgaatttgacatgtcaatcgaaggatttggttgcatctttttgccatca
attgcaccggtcggttttggattcgtcaccggcggtttgcctctgatgcatagtaacagt
caagatggggcggtgatgaaccgcggtggccttggcaatggcgagcgaattttcccacca
ctggcaggtctcacctacatgtgctgggtttacgtggaacggttttctgaatccggtcca
gacgcccatccgctgcgtctgctgactgtataccggacgttggcgtcgagtcacagtcac
gtcggtcagccgtgccatcatcagtcgcgttctttggaaccgagcactccgccaactttg
caaggcaattctgaaattgcgtgcctgcagatgcagatcagtccagtcgatcgatcgctc
ataattgccacttatgagactgacacgcccggagccgatttggacaaagatgtcggcaat
gccgacggtttcgttcggctcggcatcgaagaactgcgtcgagatcgccagtggaaccat
ttggcagtggtgttgaatcggtcggttttgaaaagcagtactgtcactgtttacgtgaac
ggccagcagaaagctagccaacgtattcagtatgtgagccattggccgaccatgggcacc
ggagccgtggccagttcgttgacgacgccgcagacgtgcacggtgaacgcgttgatcggc
accgcaccgggaccgtttcgcaaacagtcgagcttgttgtggcgcctcagtggcgcttac
ctagtggaagaggccatgtcatcccaggctgtcggccaagcctacgagcttggtccgcat
tacacgggcagcttccagtcgccgtcgtcgtttctcggtcgtccaatggccagtttggtc
accgaggagagagtctcgttcggcttgcacgcgacagccatgtcgacaatgacgctggct
cgtctgaggaagatctacaacaagcaagacagtcgcgctattggcaaactgcttggcata
tccagtcacgagaacatcacgccggttcgtctgatccacaattcgaccgtacatctcggt
ggtccggcgcgaacgttgggcggggttctggtcggctacctcggcatgaggacgttttgt
gcgaaatcgtcggccaaactgttggaaacagtcggcggtattgcctgcgttctcggcttg
gtttccatggccgatgacactgaatctttgtacgctgccatcaaagcgttgtttttcgct
ttgaaaaccaaccgagctttgaatagtgaaatggaaaagattcacggctatcagtttgta
tacagatttggtcagttcatcattgcaactttacaaatcaaagagacgtcaaatatcgag
aaatcgcttccaaatgatatccaagatttgcaggcattattatgtgaacaaatttgcaaa
gtgctcggtttcgactggatattagctttgttttacggttcgaatcacaaaggtacagtg
cgtgccggtttgcagatattgctgacaattgccaaacattcgactttgttgaatcgcttc
aaagagggcgtcggcaacggcggttggctaaccgacgccgaaagtgtagtacagaaccgt
gccggagttttgctcggcttcagcgtttcggcacggggcagttcagtgggttcgtcttgc
gatttgaatttggaaatttgcaacctggccggctttgtcgctttgcaatatctgctgcct
ggccacgccagtttggccgaaactcaaatcgcctgtgcgtctttgctcgtcggccattcg
gctcgccacttgcccacagcccacgcgcaaaacgtcgaaagcatttggtcgttgatattc
aacaacgccggcgaacaggccgtcgtcaccggcgccatgggtaagttggatttgtgccct
gaagcttcgttgccactgctgagcgtggttcgtgcctgcgttgcttcgaacgaatttgcg
agagcggaatgttccgaacagaatgctgtaacgttgattcagttcgttgcattcctttat
cagaacaattccgaattcagcaattatgcgcagacgtccgactttgtcgtcgctctggcc
tccaccctccttcgtccaaactccaaatgcaggaacaatattgaagaagagaccgttcga
ttgactttgccaaatcatccggcggttcgtcacgtgctcgaactgttgtcaagcattgct
gtcgacggttttttgtctggccagcccaacaagcacgaatctgtcattgatattctacta
gggcctgttcaacaaaatacgaacacagtggaagaattccgtccactggttacagctttt
ctgttgaacacgatggatcgattggaggcgacagatgtactggcgcgaggtgttggggtg
ccgatgtcttcgcccgctgctccgtgcaccaattacagcatcttggctgcgaatattttt
tactttgcgggaaaagtcgtatactgcctttggaatgatttgttcgacggtgatccgcag
agcgtgtttgaattcattctcaagctgtttgctcaggtgaagcgcaagtctggcccgggc
gtgccgttggatgcactttattcaagttggaatcgatgtattctatttctgctgtcacgc
gtactggacgacatgaaagcccagcgtacggtcgttgaatgcttgcaaaagattaccgca
aatcgagctttgttattttccactgctaacggtgaaccagagtttttttgctgcttggcg
catttgctgttcatgctgtcagacgttggcggtttacaaccacaacacaagttgaacaat
gaaactgaaaaggaagaaatggaacaacgtcgtctttacgacggacgcaaattggtctcg
gcgaacgcgaaacgcgtctgggaggaactttttttggcgaagaagcagctgcttgaagaa
acactgggtgtgactataatgccggatgtgggcgcgtcgcgggcatttgcctcggccgca
gccagtcaacagtggctcaactttgtcgacaacgagatgaaaggttgttacggtgccaag
gatgctttgcaaattcacatccagctacagtcgaaattgcacatggtaaccggcggtttg
cagcgtctggcaagcaagaaaaacatcaaaagcactggcacagcacgtcagacggttgta
tcgaaacagtggcacgaacatacgaaaaagtggtgcttagatgaatggacaaatctgaag
caagaattaacacgggaacggggcctttgggggccgaaaaatccgtccgtattgaacaag
tacatgttggacagcaccgaagatgttaatgcacagatgatcaaaaatacaatcaaaaga
tcagctacatctgtcagttctgccgatggagatagggacgaagccaatggtactgcttct
tcttccgatgaaccgatttccatcaacgacgacgttgccgtcgacgatacagcttcgtcg
agtgttttcagtgacagccctcaagcacgcccgcgtgatggtagtagcttcagcagtagt
acactttgctcatctgcatcggttgcaagtgaacagccagaacggctttttttgcctaaa
gagccggacagtcaaactttgctccgactactcgaagaaggggaagaattgaattcgatg
tatcgatgcgcaagaatatgcggccttgattctagcgaaggcttgctcctttttggcaaa
tatcactattacgttattgacggattcacattgttgaagactcgggaaattcgtgattta
gactttttgcctgaagaactccacgatccaattgtgccgtatattgctagcggagcaact
cgtaaccggagccagaaacgactttgcagcaaattcgcttatgaagacattcgggagtgt
cacaagcgtcggtatttgttgcagcccatagcgatcgaggtgttttcgtcggatggtcgg
aatcacttgttggcatttccgaggaaaattcgtgacaaaatttacgcgaaattgttggcc
tgcgccaaaagcttgactgatgccggacatcagagcgtctcaggtcagaaaagcggcgta
gacgtggaacaaggcgccggtttgttggcagtgttgatgggcgaaatgagcgtcacacag
cgttgggtgcgtggcgaaatatcgaatttccaatatttgatgcatctgaacactcttgcc
ggtcgttcttacaacgatctttctcagtatccagtatttccgtggatcttgagcgactac
gacagcgaggagctggatttggccaatccgaatacattccgcgatctcagcaagccaatg
ggtgcccaaacaccggcacgtttggagcaatttttgaaacgttttcgtgaatgggatgat
ccatctggagaaacgcccccatacatgtatggcacccactattcgtcggcaatgattgtc
gtttcgtatttggtacgggtggagccgtttacgcagcaatttctcaaactccaaggtggt
catttcgacttggctgatcggatgttccacagtgtcaaagatgcgtggctgtctgcttcg
cggaacaacatggccgacgtgaaagaattggtgcccgagtttttctacttgcccaacttt
ttgttgaacagcaaccactttgaactgggcgtcaagcagagcggtttgcgcttgggcgat
gtgatcttacctccgtgggccaagggcgacgcccgcgagtttgtccgcctgcaccgccag
gcgttggaatcagactacgtgtctgcgcatttgaaccaatggatcgacttgatattcggc
tatcggcaacaaggccaggcggcggtcgacgcgttcaacttgttccatcatctgttctac
gaagcgaatgtcaacttcgaagccatcgaagatccgttgaccaagaacgccaccatcggc
ttcatcaacaatttcggccaaataccatcgcagttgttcaaaaagccccatccagtcaag
cggtccttgaagtcgaccctacctcttcaacattcgatctcttcgaacgccgcctgcgca
gtggcccagcaaggcgtcgagggaccaactgccgccggaccactgttctaccacgtggct
gagaatttgaaaccaccgttgcagccattgcgagagctcaaacaggcggtcggtcacatg
gcgcagaatgacaaaggcgccctgctagccgtcgagcagaacaaagtgctcgtgccgcct
caattccacagataccttgcctggggttttccggacaacagcatacgtttgggttcgagc
gatttcgacaaatcggtctgcattcacgaatctcctcattggggcgacgtgatctgtgcc
agctgtcccaacgctcacactgcagtgaccggcagcacgtgttcggttgtttgtgtgtgg
gaaattgtcggggcggctagtcgaaatcagccggcccatttggaactgcgtaagcgactc
tacggtcacacggagccagtgtcgtgcatttacgcgtcaactaattttggagtgatcgta
agcggcagccgtgatcggacctgcattgtctgggatttgtcgaaattgagtttcatcagg
caactcggaccccatgccggacctgtgtcagcggtcagtgtgaacgaagctacgggtgtc
attgcttcttgttcgggtacacatttgcatctgtggtcatttgatggacagaaattggct
tgggtgaacacggccgacagttgtaaaaaatcggacatgaacgaaattatcattacgatt
actttttccctgctcaacgaatgggattcgcagcatgtggtcgccgttggaaccaacacc
ggaatagtgaaactgtggacggtaaagtttgtcaaagttttcgacgactgcagccatgtt
ggccggataagcagcaaatcgtcgtctcgtagctgttgcgctttgtttgcagcggaacct
gaacgtgattcccattgtgatatggatcacgtcgctgtggaaactttttcgaacaatgac
cactgcgatcgttcgacaaacgacaaagtcagtttcacacttggcaacagcaacagtcac
tctagcgaagacgatgaacaagacagcgatgcagcttttgttgatgagggcgtgtcgaaa
gttttgccgacgtctagttgtgctgaagtggtaaaaagtcgaaattctgaaatggtggat
attcgtcgacgcagctctgaatcgacaatgcaaaaatcttcggaaggtggaaattgttgt
ggtgatggtgaaccgcagcgaaaatttcattgggaacggcagctagttttccggggaaaa
ttgacaatgcatactgcatttgaacgcaaggataatcccgcaccagctgctgtgactgcg
ttgatgccatccaaagatcacaaagcgttgtatgtcggtgatggacgtggccgggtttgg
atgtggactgtcggtgatggtcataatggtggccgagctgatcattgggttcaagatccg
tcgagaaatttgtgttccaattgtcatcagaaatttacgttgacagatcgacgtcatcat
tgtcgcaattgtgggcagctgttttgttcgaggtgtagtagatttgagtctgaaatacgg
catttacgaattcgaaggccagttcgggtgtgtcagagttgccatgctcgtctgaaggca
accgacgattctcaatcgtcgaaccatgctagttaa
DBGET
integrated database retrieval system
