Trichinella spiralis: Tsp_02745
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Entry
Tsp_02745 CDS
T01609
Name
(RefSeq) putative RNA recognition motif protein
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
tsp
Trichinella spiralis
Pathway
tsp03015
mRNA surveillance pathway
tsp03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Tsp_02745
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
Tsp_02745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_02745
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
Tsp_02745
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
BssS
Motif
Other DBs
NCBI-GeneID:
10899365
NCBI-ProteinID:
XP_003379073
LinkDB
All DBs
Position
Unknown
AA seq
468 aa
AA seq
DB search
MSDCLEDIGSNDCNGLEADCDLYGDCDVNLEDMNEGADSPKCALREDSVERIDDEDLYDL
DVSDKSSTGQSQEKCTPTRAIPTLKTSSGKNVEVSASDSLRNVRPHSCYVGNLTWWTTYF
DLQNALQSIGITDLVEVRFNENRANGQSKGFASVGFASEASVRKCLESLSTQNIHGMTPI
VMPFNKSSLHSLDVTARKPEEKLPVKQNRQEKSGNVQFLGTIRLGANVSSQSSGHRAEGR
SNRGSSSNQRNRNHPPSLLSASLSLPIPAPTITSFTTPPMVPSVMVPPLIPNRPPPGYPS
SSRPVIQSVLSGIPPSAIPPPGSHVNPNFYPGLVGASSHNIYGEVGHSDDFEEIMSRNRT
VSSSAISRAVADAAVGDYSSAIDTLLTAINLLRQSKVAQDERCRILITSLQDTLHGIENK
SYRRRNKTPRERDRSRERRTKRRERSRSRSRSHDRFAVNDYSPRRKRY
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattgcttggaagacattgggtcgaacgattgtaacggtctggaagcagactgc
gatctatacggcgactgtgatgtcaatcttgaagacatgaacgaaggtgctgacagtcct
aaatgtgcattaagggaagattctgtcgagcgcattgatgatgaagacttgtacgatttg
gatgtgtcggacaaatcatcaactggccaaagccaagaaaagtgcacgcctacccgagct
atacctacactgaaaaccagtagtggtaaaaatgtggaagtctcggccagcgatagcctg
cgaaatgttcgcccgcactcgtgctatgttggtaatttgacatggtggactacatatttc
gatttgcaaaatgcattgcaaagcattggaataaccgatttggtcgaagttcgattcaat
gaaaatcgtgctaatggtcaatcaaagggatttgcatcggtcggctttgcatctgaagcg
tcagtcaggaagtgtttggaaagcctgtcaacacagaacattcacggcatgactccaatt
gtgatgccgttcaacaagtcttcattgcattcactggacgtgacggcacgtaaaccagaa
gagaaattaccagttaagcaaaatcgtcaagagaagtccggaaatgtgcaattcttgggt
acaatacgactgggtgcgaacgtatcttcacagtccagcggtcaccgtgctgaaggacgc
tcaaatcgcggttcttcgtccaaccaacgcaatcgcaatcatccaccgtcattgttgtcc
gcatctctcagtttaccaataccggcaccgacgatcacttctttcaccactcctccaatg
gttccatcggttatggttcctcctttgattccgaaccgtcctccgccgggctatccatca
tctagccgacctgtgatacagtctgtgctttctggaatacccccttctgctattcctccg
ccaggtagtcatgtcaatccgaatttttaccctggcctggttggtgcatcgtctcacaat
atatacggtgaagtgggacacagtgacgattttgaagagatcatgagtcgcaatcgaacc
gtttcaagtagtgctatcagccgggcagtagcggatgcagccgtgggagattatagctca
gctattgatacattattgacagctataaatcttctgcgacagtcgaaagtggctcaagat
gagcgctgtcgcattttgattaccagtttgcaggatacgttgcatggcatcgagaacaaa
tcctaccgacgtcgaaataagactccacgcgaacgtgatcgctctcgagaacggcgcact
aaacgtcgggaacgctctcgaagcagatcccgttcacacgatcgttttgccgtcaacgac
tattcacctcgtcgcaagcgttattaa
DBGET
integrated database retrieval system
