Trichinella spiralis: Tsp_02790
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Entry
Tsp_02790 CDS
T01609
Name
(RefSeq) putative mediator of RNA polymerase II transcription subunit 23
KO
K15166
mediator of RNA polymerase II transcription subunit 23
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsp03021
]
Tsp_02790
Transcription machinery [BR:
tsp03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Other mediators
Tsp_02790
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med23
PAP2
MNHE
Motif
Other DBs
NCBI-GeneID:
10899573
NCBI-ProteinID:
XP_003379119
LinkDB
All DBs
Position
Unknown
AA seq
1267 aa
AA seq
DB search
MSVSLSDFEAKVKNLFKEHAKSGIAYFFFQPYLITSSEECEKKMVISTANELIEIFTSLP
QNLQESAFSIVISHRVLSNSANRIVDFFVRNVTQRQMLSIKCICEKLLTCAELNINNCGW
NDTFAFFMENISLLDYKDLLNPQMRLLTHVFMHFTYRDAIAVLLGTAKPEKSRIPYFEEV
ITEIILELMFTAECDHSQLNPQAWRIISTQIIYLTLQQSICFTRLVKILHTKLTHYPYRY
ARNQLMWCLFNFLSGGMQKYSGKSAWPSPALVETYCRMLTYPDLEILGLKQFTSHIVLTA
ARHQCCEMMYICCEILNYRLFNIPSTYRVHAIVTLQQTLAFAKFQTNASLYWMYRCYYYY
YYFAPFARLLNSFVAVAADGTKQSIAENEELMRIIILTLARSTVISKVLGPRKVLVHLKS
LADFLVYETNSADVNRCVDVLNRLIFKYAVVPLERFMLTMLLRDYEGNDAFYALLIVMLL
VQRSEELRSAVADCVAMLPSDYWHCQDWNDKYQAYQIKHAERTWSQVHVELSRASLTPND
CPLPVYFGTRCLQMLPVVDLLLQKLVESPAACLKFLDSTLSILGPLYRFHPYPVSFLYST
FRFYEKRLVESPAIKQKLALAVHGACVPSRDDHWLLSAEFVGWVGQATDRGPWVPDLNYY
AALVRRLIDTFSEPRQQWSRKTDLRFVEFNNFQTHALYSICIELMSLPVGVVDVGNALVT
LVTHWHSLVDKNTVMYWVNAIGLIFSALPISYMEPFYQTILTTLCSDHMNSINTDVSNKL
DFEKRSKLMEDCYPARILALCHAVWLHSASGYLQLLPQALRSTWIPHVRSEGQFLYVCHL
VAPFLQRFYQERTKFTMDITTDLYQMLYNVDCEVGNWKYEDLICDFFYHVKYMYVGDSVR
QDTDRIIPMLRPSLQQKLRYISFAQGEQSSGTPFSEMINPIKLLGIQMVVWLQRLPIFGE
TAQHFWLAVTKLGDPVMTFSLYFPALFPFFGTAALDMVIVGAFSEISNCILKWILLDDRP
YWWVYTAGVSGQLSHPLKQFQWTCETGPGSPSGHAMVSASVWFNLLYNLQSDLVLGDLSG
ICWLLYVVFLIAVSISRTYISAHFPDQVILGIVVGICIALVTRSLVGHRRRRWSNLIAFM
IALLLIALSVHEAHRFFGVDTHRSIELAAKYCHRAEWIHQSTTPLASFFRDVGVLISVAI
LLANKSMFTNNNNKIASKFFSTKFAQALLGVGLNQLVALIPIGRLPTALFYAVLLPVLFT
NNSNKLQ
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtttcactttctgattttgaagcaaaagtaaaaaatttgttcaaggagcatgca
aaaagtggaattgcctatttctttttccaaccttatttgataacatccagcgaagaatgt
gagaaaaaaatggttatatctactgcaaatgaacttattgaaattttcacatctttgcca
cagaatttgcaagaatcggctttttccatcgtgatatcacatcgagtgttatcaaattca
gcaaacagaattgttgatttctttgtcagaaatgtaactcagcgacagatgctgagcatc
aaatgcatttgtgaaaagttactaacctgcgcagaattgaacattaacaactgcggctgg
aatgatacatttgctttctttatggaaaatatttctcttcttgactataaggatctactg
aatccccagatgcggctgttaacacatgtattcatgcattttacatatcgagacgctatt
gcggtgctacttgggactgctaagccagaaaaatcacgaataccttattttgaagaagtg
ataactgaaatcatcttggagttaatgttcactgcagaatgcgaccacagtcaattaaat
ccacaggcttggcgcattatttcaacgcagattatttaccttacccttcaacagtcaatt
tgctttacaagattagtaaaaattttgcatacgaagcttactcattatccatatcgatat
gcgaggaatcagctgatgtggtgtttgtttaactttctttctggtggaatgcagaaatat
tcggggaaaagtgcttggccatcgccagctttggtggaaacgtattgtcgcatgttgacg
tacccggatttggaaattctcggcttgaagcagttcacatcgcacatagtactcacagcg
gcacgtcatcaatgctgcgaaatgatgtacatttgctgtgaaattctcaactatcgtcta
ttcaacatcccgtcgacgtatcgtgttcacgcaattgttacattgcagcagacgttggct
tttgcaaaatttcaaaccaacgcatctctttactggatgtatagatgctattattattat
tattatttcgccccgtttgcgcgtcttttgaattccttcgtcgcagttgcagccgacgga
acaaagcagtcgattgctgaaaatgaagaattgatgagaattataattttaacattagct
cgttctacagttatatccaaagtgctcggtccgcgcaaggtgctcgtccatttgaaatcg
ctggccgactttctcgtctacgagaccaacagcgccgacgtgaatcgttgcgtcgacgtg
ctcaatcgtttaatattcaaatatgccgtggttccgttggagcggttcatgttgaccatg
ctgctgcgcgactacgaaggtaacgacgccttttacgcgctgttgatcgtcatgctgttg
gtacagcgttccgaagagctgcgctcggcggtcgccgactgcgtggccatgttaccgtcc
gactactggcactgccaggactggaacgacaaataccaagcctaccagatcaagcatgcc
gaacgcacttggtcccaggtccatgtggaactgagccgcgcctcgttgacaccgaacgac
tgtccactgcctgtttattttggcacccgttgcttgcaaatgcttccggtggtggatttg
ttgttgcaaaaattggtcgaatcaccagccgcttgtttgaaatttctcgactcgaccctg
agcatacttggtccgttgtatcggttccacccatatccggtgagttttctctattccacg
ttccgcttttacgaaaaacgcctggtcgaatcgccggccatcaagcagaaactcgctctg
gccgtgcacggggcctgcgtaccgtcgcgcgacgaccactggctattgtcggccgaattt
gtcggctgggtcggtcaggcgaccgaccgcggtccatgggttcccgatttgaattactac
gcggcccttgttcggcgcctgatcgacaccttttccgagcccaggcagcagtggtcgcgc
aaaactgacctgagatttgtcgaattcaacaacttccaaacccacgctctctactccata
tgcatcgaattgatgtccctgccggtcggcgttgtcgacgtcggcaacgctctggtcact
ctggtcactcattggcacagtttggtcgataaaaataccgtcatgtattgggtaaatgcg
atcggattgatcttttccgctctgccgattagttacatggaaccattttatcagactatt
ttgacgacactttgttcggatcatatgaattcgatcaacacggacgtcagtaataagtta
gattttgaaaaacgatcaaaattgatggaagactgctatccggcacgtatacttgccctt
tgtcacgctgtttggttgcacagcgcatccggctacttgcaactcttacctcaagcttta
cgctcaacttggatacctcacgtacgttctgagggacaatttttgtatgtttgccatttg
gtggcaccatttctgcagcgattctaccaagaacgtaccaaatttactatggacattaca
acagatctatatcagatgttgtacaatgttgattgtgaagtgggtaattggaaatacgaa
gatttgatttgtgattttttctatcacgtcaaatatatgtacgttggtgacagtgttcga
caggatactgatcgaattattccaatgttgcgcccttctttgcaacagaaattgcgttat
ataagctttgctcagggtgaacagtcatcaggcacgccattttccgaaatgatcaatccg
ataaaattgttgggaattcaaatggttgtatggcttcaacgactgcccatatttggcgaa
acggcgcagcatttttggctcgcagtgacaaaactgggcgatccggtaatgacattttct
ctatactttccagctttgtttccattttttggcaccgctgcgttggatatggtaattgtt
ggtgctttcagtgaaatttccaattgcatattaaaatggattctgctggacgatcgacca
tactggtgggtctacacagccggagtgagtggacaactgtcgcatccgttgaaacagttt
caatggacatgtgaaactggacctggcagcccgagtggtcatgcgatggtttcggcttca
gtttggtttaatttgttgtataatttgcaaagcgatctggtgctcggtgatttatctgga
atttgttggctgttgtacgttgtgtttctaatcgcagtgtccatttctcgaacttacatc
agcgctcattttcctgatcaagtgattttgggcatcgttgttggaatttgcatagcgttg
gttacgcgttcgctggttggtcatcgtcgtcggcgatggtcgaatctgatcgctttcatg
attgctttgctgttgattgccctgagcgtgcacgaagcgcaccgatttttcggcgtcgac
acgcaccggtcgatagaattagcggctaaatattgtcaccgagctgaatggatccatcag
tccaccacaccgttggcatcattttttcgtgatgtcggtgtgctaattagcgttgcaata
ttgttggctaacaaatccatgtttacaaacaacaacaacaagattgcatcgaaatttttc
tctaccaaattcgctcaagcattgctcggcgtcggcttgaatcagctcgtcgcgttgata
ccgatcggacgcttgcctactgcactgttttacgccgtactactgccagtgttgttcacc
aacaattcaaacaaattgcaatag
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