Trichinella spiralis: Tsp_02842
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Entry
Tsp_02842 CDS
T01609
Name
(RefSeq) hypothetical protein
KO
K14544
U3 small nucleolar RNA-associated protein 22
Organism
tsp
Trichinella spiralis
Pathway
tsp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Tsp_02842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tsp03009
]
Tsp_02842
Ribosome biogenesis [BR:
tsp03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
Tsp_02842
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nrap_D5
Nrap_D3
Nrap_D2
Nrap
Nrap_D4
Motif
Other DBs
NCBI-GeneID:
10899626
NCBI-ProteinID:
XP_003379172
LinkDB
All DBs
Position
Unknown
AA seq
1059 aa
AA seq
DB search
MKRKLNDEKSTDKIISEKVHNGIQVSNGTSAKLSCSKDAALSVDYQSTNFRTTAELEAQA
QVNVLKNSPQLMKDVNAFLALLKKQLRVIPEASCEDAVATAVRLAKEFDVQQYFEMLVCL
VPSNGKFTFAPPNSLRLIGSFPLELNVKPNLTVDIAVEVPKATFAESSLNTYSYHLKMLL
FLLLIASKLRTSKFVKQLNLEFFHDDPRKLIIVLHPKGDLDGRCIFHLIAYPEEGTFQLE
KFAPSVYHLNAERFLKAFGEDIKGTNLASHFYNQSIARDAVMMQIFNYLEDEENFPKNAR
AGVQLLRLWIRRRELDQGYGCVSCTFLSLFVCYLVKERRIQSHWTAWDVFKAAIFAFSNI
ELENNPVTLCQSENGLTLLNEFKSAFPIVFADPTGYVNVCAHWHASTWRMLKHEALLARQ
MIENAGSELFTRLCLQPVPFAEKFDIYFTINLPKSMQNEVWKNAQLRCKLIDMYGLTSEA
IWKDVYDCMWTALGDRVLLIGKNVVQYENKMTSNYVNFEKALTFGILIESGRKCDFVIRG
PAANLPEAVNFRRFWGDKSQMRKFKSYGICETVLFDSSNVRSIFGDIVYYVLNRHIKISR
KRIISSDISEEFCLGLPGGYRFAEKRLRLSLHAAMAKVEKCLQLLTDMPFQICELTRVGS
IFSDLEVYYPVPVDLQYNKLSLPIINGCFVPEATAKVPPWCPSCEMMMIIDIKCRYLNSL
SELRNIKTGCCVQVSEQLRKRFKLLCQPVEKAILIFTNGYVFRLHVSFKSEEFFLKNLAE
EKKNHAAELETESMIRWKQALFSQFEVYVRLRLQFESFSATVRLAKRWVANKMLSGHFSD
EAVELIIASLFLTPQPFTESRHHLIGFLRFLRLLSTFPWSSEPLMVNFNNILTDEEMLEL
KQQWRIVRPTLPPFCLLTPDDHSGARWTRAGPSSIVADYIIRRAAFDLRILQNDGLTTCT
LRKIMHSGKQVFDVVILLSRKRNLQPTVAPVEEENTADDGKANAAYNLKALPVVDFSPVE
FYVRQLKDQQKIQATACTDEIIKGFYALGYDLVKRIVVQ
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggaaattgaatgacgagaaaagcacagataaaattatcagtgaaaaagtgcac
aacggaatacaggttagcaatggtacaagtgcaaaattgtcgtgttcaaaagatgctgct
ttatctgttgattaccaaagtacaaactttcgtactacagcagaactggaggcacaagct
caggttaatgtactcaaaaactctcctcagcttatgaaagatgtcaatgcatttcttgcg
ttgttgaaaaagcagctacgcgttataccagaagcaagctgcgaagatgctgttgcgact
gcggtaaggttggctaaagaatttgatgttcagcagtattttgaaatgctcgtttgtttg
gtaccgtcgaatggcaaattcacttttgcaccaccaaattcgcttcggctcatcggaagc
tttccacttgagcttaatgtcaagcctaatttgaccgttgacattgctgttgaagttccg
aaggcaacatttgcggaaagttctttgaatacgtattcctatcatctgaaaatgctgtta
tttttgttattgattgcatcaaagctacgtacgagcaagttcgttaagcagttgaatttg
gaatttttccacgatgatcctcgaaaattgatcatcgtgcttcatccgaaaggtgacttg
gatggtaggtgtatttttcatctaattgcctatccagaggaagggacgtttcagttggaa
aaatttgcaccctctgtttatcatttgaatgcagaacgttttctaaaggcattcggtgaa
gatataaagggtacgaatttagccagtcacttttacaaccagagcattgcacgtgatgcg
gtgatgatgcagattttcaactatttggaagatgaagaaaattttccaaaaaatgctaga
gctggagttcagcttttgcggctctggatacgtcgccgagagctggatcaaggttacggt
tgcgtatcatgcactttcttgtcattattcgtttgttatctcgtcaaagaaagacgaatt
cagtctcattggactgcatgggatgttttcaaggctgcaatttttgctttcagtaatata
gaattggaaaataatccagtgacgttgtgtcagtcggaaaatggattgactttgttgaat
gaattcaaatctgcgtttcccattgtatttgccgatccaacgggttatgtgaacgtttgc
gctcattggcacgcttcaacctggagaatgctgaaacacgaagctttgcttgcgagacaa
atgattgaaaatgcaggttcggaattgttcacccgtctctgtcttcagcctgttcctttt
gcagaaaaatttgatatttattttacaataaatttgccgaaatcgatgcaaaatgaagtt
tggaaaaatgctcaactacgatgcaaactgatcgacatgtacggcttgacttcggaagct
atttggaaagatgtgtatgactgtatgtggacagcgttgggtgatcgtgttttgctcatt
ggcaagaatgtagttcaatacgaaaataaaatgacaagcaattatgtaaattttgaaaaa
gcgctcacatttggaattttgatcgaatcgggcagaaagtgtgattttgtgatccgtggt
ccggcggccaatttgccagaggcggttaattttcgcagattttggggcgataaatcacag
atgcgcaaatttaagtcctatggaatttgtgaaacagtattgttcgatagttccaacgtt
cgatcgatttttggtgacattgtttattacgtgctgaatagacatattaaaatttcacgc
aagcgtatcatttcttctgatataagtgaagaattttgtctgggcttacccggaggctac
agatttgcagagaaacggcttcgtttgtccttgcatgcggcaatggcaaaggtggagaaa
tgtttgcaactgttaaccgatatgccatttcaaatttgcgaattgaccagagtgggatcc
attttttccgatctcgaggtctattatcctgtgcctgttgatttgcagtacaacaagctg
tctttaccaataatcaatggttgctttgtaccggaggcaacggcaaaggtaccaccgtgg
tgtccttcttgtgaaatgatgatgattatcgacatcaaatgtcgatatttgaacagttta
tctgaattgcgcaacattaagacaggctgctgtgtacaagtgtctgagcagttgcggaaa
cgcttcaaactgctctgccaaccagttgaaaaggccattttaatctttaccaatggttat
gtgtttcgattgcatgttagtttcaagtcagaagagttttttttgaaaaatttagccgag
gagaaaaaaaatcatgctgcagaattggaaacggagagcatgattcggtggaagcaagca
ttgtttagccagttcgaagtgtatgttcggttacgtctacaatttgaatcattttcggct
actgttcgattagccaaacgttgggtagctaacaaaatgctcagtgggcatttctccgat
gaggcagttgagctgataattgcttcgttatttctaactccacagccattcaccgaatct
aggcatcacttgattggttttttgcgatttttgcgacttttgtcgacatttccatggtcc
agcgaaccgctaatggtaaattttaataatatattgacagatgaagaaatgctggagttg
aaacagcaatggagaattgttcgaccgacgctaccaccattttgtttgcttacaccggac
gatcacagtggtgcaagatggactcgagcaggtccatcatcgatcgttgctgattatata
attcgtagagcagcattcgatttgcgcatcttgcagaacgacggcctgaccacgtgcact
ttacgcaaaataatgcatagtggtaaacaagtgttcgatgtggttattctgctgagtcgc
aagaggaatttgcaaccaaccgttgcgccagttgaagaagaaaatacagcagatgatgga
aaagcaaacgcagcctacaatttaaaagctttaccagttgtcgatttcagtcctgttgaa
ttctacgtccgacaactgaaagaccagcagaagatacaagcaaccgcctgtacggatgaa
attatcaagggattttatgcgttgggatatgatctggtgaaacgaatcgttgttcaatga
DBGET
integrated database retrieval system
