Trichinella spiralis: Tsp_03010
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Entry
Tsp_03010 CDS
T01609
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin-A
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
tsp
Trichinella spiralis
Pathway
tsp04120
Ubiquitin mediated proteolysis
tsp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Tsp_03010
04120 Ubiquitin mediated proteolysis
Tsp_03010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tsp04121
]
Tsp_03010
Enzymes [BR:
tsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
Tsp_03010
Ubiquitin system [BR:
tsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
Tsp_03010
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
PIN_6
Zn_ribbon_NOB1
DZR
Zn_ribbon_15
Ribosomal_aS21
Motif
Other DBs
NCBI-GeneID:
10900124
NCBI-ProteinID:
XP_003379346
LinkDB
All DBs
Position
Unknown
AA seq
892 aa
AA seq
DB search
MQVRYGHLLVFSFLLTAAVVFHAFHQRKQFYPSMVYLSKSNASVTHIADRAMFAVTETCL
AFTIFRDDFSPRFVAQFTQLFFFKCFHWMAEERIDYMERSPVVTTLFCARIMGLIAILSA
VDSYHISHAYFTTLQKGATPQIVFGFEYAILLTVVFHIAVKYVLHRVDLRQPHPWENKAV
YLLYFELVIVFLRVLLYAIFICVTMQLHTFPLFSIRPMYLALKTLKKAIMDAVLSQRAIR
NMNSLYPDVTAEDLSRGDLNMPTWFAGLPAGIIQPPAPGVGDGTPSSINPTVFAGFTGNA
QAFPTPPDFTGLTDEEVRQMEGNERKSVEARIRCLRNIQTLLDGAVVLMQQYTSLMSAMD
EKRSVNTEETEHKKETTSKTEEVNAKTVNIDEMAEKPSTSAAAVAGSSSGDAQHELRQRR
LQHYEKSAKAAKPQFNQRNAVELLRFSFTVHLCMNLYNNFCKYNQSSLCTGLNFFTISAI
FSLINKSPRSFGGTKAGFICSFHQTYTEAKAANIRCHDNHCFCSLDLDLWFILITEMQLL
VEHLMVDTVGFVKADDLRKYGKNIYTIQDVLNEIRDSNTRKKLSTLPYDLKTVMPDEKAI
RFVIEFSKKTGDYPSLSVTDVKLIAAVYTMELEHVGSEHIIQEPKVQKTSAVGGLKCEDV
KGLPGFYMPSKKKQSDCSDLEEAVRKIDIQDHSTSEEENSFSESDSEYDDDEIRDTSNLS
GWITPENFSSTVGSANDTVPVACLTADFAIQNVLLHMGLKVVSVDGMLIKQLKTYILRCF
SCFHMTSKMMKKFCPNCGNATLKRLAISVDENGCTVFHFSRRKFSIPAPKGGKHANNLIL
CEDQPVSQNRLSRKARQNLDVFDPDYIAGQSPFSLNDITSRYSKQILIVMFF
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtaagatacggacacctgcttgtgttcagctttctactcacagcagcagttgtt
ttccatgcttttcatcagagaaaacagttctatccatctatggtgtatttgtcgaaatca
aatgctagtgttacacacattgcggacagggctatgtttgctgtaacagaaacctgcctg
gcttttactatttttcgcgatgattttagccctcgatttgttgctcagtttactcagttg
tttttcttcaaatgttttcactggatggcagaagaacgaatagattacatggaaagaagt
ccagttgttactacactgttctgcgccagaattatgggtttgattgcaattttgagcgca
gtagattcttaccatatatctcatgcatattttactactctgcaaaaaggagctacacct
cagattgtatttggttttgagtatgccattttgctgactgttgttttccacattgcagtc
aagtacgtgctgcatcgtgtagatctgagacagccgcacccttgggaaaataaagcggtt
tatcttttatattttgaacttgttattgtatttttacgagttctgttgtatgccattttt
atttgtgtaacgatgcagttgcacacgtttccactgttttccattcgaccaatgtattta
gctttgaaaactttgaaaaaggcaattatggacgcagttttatctcagcgtgctattcga
aatatgaattccttgtatccggacgtgacagcagaagatttgagtcgcggcgatttgaat
atgccaacttggtttgctggtttacctgcgggaataatacaaccgccggcaccaggcgtt
ggagatggaacgccgagttcgatcaatcctacagtattcgctggtttcaccggcaatgca
caagcgtttcctacaccgccagattttactggtctcactgatgaagaggtacgtcaaatg
gaaggtaatgaacgaaaatcggttgaagcacgcattcgatgtttacgcaatatacaaaca
ttgcttgatggtgccgttgtactcatgcagcagtacacaagtctaatgagcgcaatggat
gaaaagcgttctgtcaatactgaggaaactgagcataaaaaagaaacaacttcaaagact
gaagaggtgaatgcgaaaacggttaatatcgatgaaatggcggaaaaaccaagcacctct
gctgctgctgttgctggtagttcttctggtgatgcacaacatgaattaaggcagcgtcgg
ctgcagcattatgaaaaatctgctaaagccgcaaaacctcaatttaatcaacgcaatgct
gttgaattgttaagattttcatttacagtacatttatgcatgaatttatacaataatttc
tgcaaatataatcagtcatccctgtgcactggtttgaactttttcaccatttctgcaatc
ttctctttgataaacaaatcccctcgttcattcggaggaactaaagcgggattcatttgt
agtttccaccaaacgtacacggaagctaaagcagcaaatatccgttgtcacgacaatcat
tgtttttgtagtttagatttggatttgtggtttattttaattactgaaatgcagcttcta
gttgaacatttgatggttgacaccgttggttttgtaaaggcagacgatttgagaaaatat
ggtaaaaatatttatacaattcaagatgttttgaatgaaatccgcgattctaatacgcga
aaaaaattatccaccttaccgtatgatctgaaaactgtgatgcctgatgaaaaagctatt
cgatttgttatagagttttccaaaaaaactggtgattatccaagcttatcagtaacagat
gtgaaattgatagcagcggtttatactatggaactagagcacgtaggctctgagcacatt
attcaagaaccgaaggtgcagaagacttctgccgttggtggactgaaatgcgaagatgtc
aaaggtttaccaggtttttacatgccatcaaagaaaaaacagtccgattgcagtgatttg
gaagaggcagtgagaaaaattgacatccaggatcactcgacttcagaagaggaaaattct
ttctcggaatcagacagtgaatacgacgacgatgaaattcgtgatacctccaatttaagt
ggttggattaccccagaaaatttctcttcaaccgttggcagtgctaatgacactgtgcca
gttgcatgtttaaccgctgactttgccattcaaaatgtattattgcacatgggcttgaaa
gtggtctctgtggatggtatgctgataaaacagttgaaaacttatattttacgttgcttt
tcttgttttcacatgacaagtaaaatgatgaagaaattttgtcccaactgtgggaatgca
acattaaaacgccttgcgatcagtgtcgatgagaacggttgcacggtgtttcatttttcc
cgaagaaaattttccattccagcacctaagggaggaaagcatgcgaataacttgatttta
tgtgaagatcagccagttagtcaaaaccgtctcagtcgaaaggctcgccaaaacttagac
gtttttgatcctgattatatagctggtcagtcgccattttccttgaacgatattactagc
aggtatagtaaacagattttaatagtcatgttcttctga
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