Trichinella spiralis: Tsp_03302
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Entry
Tsp_03302 CDS
T01609
Name
(RefSeq) putative tetratricopeptide repeat-containing domain protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tsp
Trichinella spiralis
Pathway
tsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tsp_03302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_03302
03041 Spliceosome [BR:
tsp03041
]
Tsp_03302
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
Tsp_03302
Spliceosome [BR:
tsp03041
]
Complex B
Other components
Prp19-related factors
Tsp_03302
Complex C
Tsp_03302
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_12
Mad3_BUB1_I
TPR_15
TPR_2
SNAP
ARM_TT21_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
10908798
NCBI-ProteinID:
XP_003379646
LinkDB
All DBs
Position
Unknown
AA seq
765 aa
AA seq
DB search
EEDDIPYEEDLFRNRFSLKCWLRYIEHKTQSSKNVASVNLLYQRALRELPGSYKLWYQYL
KLRRGQVAKKCVTDPLYEEVNKCFRTALVFMNKMPRIWILYCTFLVKQRFITRTRHAFDD
ALRSLPITQHYRIWPIYLKFLHLHDIPETTIRVYERYLKIAPQDAEQLVEYLKSVDRLDL
ACIHLSAIVNDSNFISREGKTNHELWHELCSIVAKNPSKVTSLNAELLVREGVEKYPDQT
GALWCSLADYYIRDGCFEQARDVYEEAMRTVRTVRDFTQHKSDSNFNIDLLMARFEDLMD
RRPLLINSVLLRQNPHNVHEWLKRAELCKSNPKEVEETFEEAVNTVNAKLQLGKLSNLWI
AYAVFFEQQAQLKKAREIFERALLAPYPKVDDLASVYCSWAEMELRSKKWQKALQVIKRA
VKKPAFKTDYYDESETVQNRVYKSLKVWSMYADLEESFGTFESCKEVYEKILDLRIATPQ
LIINYTMLLESKNHFEESFKVFEKGIALFRWPNVNDLWETYLVRFLKRYAGSKLERARDL
FEQCLNSCPPEYATKFYLLYAKLEEEHGLPRNAMNIYQRAVDSVPRDEMINIFNVYIKKA
AELFGVTSTRAIYEKAIEVLPEKDARSMCLQFATLERRLGEIDRARAILAHCSQMCDPRV
VPSFWSFWKDFEIKHGNEDTVREMLRIKRSVQAALNTQVNFMSAQMLATTGGPAESAELS
SLSWLLIFNIFEIQFQLMSWVRAIVWLYWKLKHKRFLKKHRKKIF
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
gaagaagatgatattccgtatgaagaggatttatttcgcaatcgattttctttgaaatgc
tggcttcgatacatcgaacataaaactcagtcaagtaaaaatgtagcaagcgtaaatttg
ctctaccagcgagcgttgcgtgaattgcctggaagttacaaactttggtatcaatattta
aaattgcgtcgtggtcaagtagctaaaaaatgcgtcaccgatcctttgtacgaagaagtg
aacaagtgttttcgaacagcgctagtgtttatgaataaaatgcctcgaatatggatcctt
tattgtacttttttggtgaaacagcgttttattacgagaacacgacatgcatttgatgac
gcattgcgatctttgccaataactcaacattaccgtatttggccaatttatttaaagttt
ctccacttgcacgacattcctgaaacgacaatacgcgtttatgaacgttatttgaagatt
gctccgcaagatgcagagcagctcgtagaatatttgaaaagtgttgaccgcctagatttg
gcttgcattcatctttcggccatagtgaacgattccaattttatcagtcgggaagggaaa
acaaatcatgaattatggcacgaattgtgcagcatagtggcgaaaaatccttcaaaagtt
acctctttgaacgcagaattgctcgtacgcgaaggcgttgaaaaatatccggatcaaact
ggagcattgtggtgttctcttgccgattattacatacgagacggatgttttgaacaggca
cgtgatgtgtatgaagaagcgatgagaactgttcgaacagtccgagattttacgcagcat
aaaagtgattcaaatttcaacatcgacttgttgatggctcgttttgaagatttgatggac
agaagaccgttgcttataaatagtgtgctattacgtcaaaatccacataacgtgcacgag
tggttaaaacgtgcagaattatgcaaaagcaatccaaaagaggttgaagaaacgtttgaa
gaagcagtgaatacagtgaacgcaaaattgcagcttggaaagttgtccaatttatggata
gcgtatgcagtgttttttgaacaacaagcgcaattgaagaaagcgagagaaatattcgaa
agagcgttgcttgcaccatatccgaaggtggatgatttagcatcggtttattgttcttgg
gcagaaatggagctgcgttccaaaaaatggcaaaaggcattgcaagtaatcaaaagagca
gtgaaaaaacctgcttttaaaacagattattacgatgagagcgagacagtgcaaaatcgt
gtatacaagtcgttgaaagtttggagcatgtacgctgatttggaagagagttttggaacc
tttgagtcatgtaaagaagtatatgagaaaatattggatctgcgaattgcaactccgcag
ttgataatcaattatacgatgcttttagaaagcaaaaatcattttgaagagtcttttaag
gtttttgaaaaaggaattgcactgtttcgatggccaaacgtgaacgatctttgggaaaca
tatttggttcgctttttgaagcgttatgccggaagtaaattggaaagggcacgagatctt
tttgagcaatgtttgaatagttgcccacctgaatatgctacaaaattttacttattatac
gcaaaattagaagaagaacatggtttgccgagaaatgcaatgaatatttaccaaagagca
gttgattcagtgcccagagatgaaatgattaatatatttaatgtgtacattaaaaaggca
gccgaactgtttggtgtgacaagtactagagctatttatgaaaaagcaattgaagtattg
ccagagaaagatgcaaggagtatgtgtttgcagtttgccacgttggagcgacgattgggt
gaaattgaccgggctcgtgcaattttagcacactgttctcagatgtgcgatccaagggtc
gtcccttcattttggtcattttggaaagattttgaaatcaagcatggcaatgaggatacg
gtccgagaaatgttgcgtatcaaacgcagcgttcaggctgctttgaacacacaagtgaat
ttcatgtcggctcagatgttagcaacaacgggcggtcctgcagaaagtgcagaattaagc
agtttgtcatggttattgatttttaatatttttgaaatacaatttcagttgatgagttgg
gtcagggcgatagtatggctctactggaagctaaagcacaaaagatttctcaagaagcat
cgaaaaaagatattctaa
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integrated database retrieval system
