KEGG   Trichinella spiralis: Tsp_03550
Entry
Tsp_03550         CDS       T01609                                 
Name
(RefSeq) u4/U6.U5 tri-snRNP-associated protein 1
  KO
K11984  U4/U6.U5 tri-snRNP-associated protein 1
Organism
tsp  Trichinella spiralis
Pathway
tsp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Tsp_03550
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tsp03041]
    Tsp_03550
   04121 Ubiquitin system [BR:tsp04121]
    Tsp_03550
Spliceosome [BR:tsp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP specific factors
    Tsp_03550
 Complex C
   U4/U6.U5 tri-SnRNP specific factors
    Tsp_03550
Ubiquitin system [BR:tsp04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    Tsp_03550
SSDB
Motif
Pfam: SART-1 LIM HIND Auto_anti-p27
Other DBs
NCBI-GeneID: 10909782
NCBI-ProteinID: XP_003379901
LinkDB
Position
Unknown
AA seq 1114 aa
MWHPEHFVCAHCGQELGRQNFYERACNAYCENDYHRLFSPRCAYCNGPIKDKCITAMDRT
WHPEHFFCAQCGKQFGEEGFHVNNGRPFCRQDYFAYFALRCQACQQPLMNNYITALNAHW
HPHCFACHDCKQPFVGGSFFEHLGEPYCETHYHEKRGPRDRCCKQRSIGFEFLCYAFEKT
IGTMSHSTPMDRDAAVKAIADHMLRGYCMLDDYCKTCGGVLLQDRNKKILCVCCPVMDTE
ENEAAKSEPAQVEAEAKPAEEKLQPVKSISLQYKYQPVSYGLEKVRSCLMREMVDVAEEL
NRSSSVGERRNLLQLIQQISKTLKSLAKRKRSKSSSDREAEGGKKRLKKSGTKGKNVKKP
VQPNDDDKIESTFDDSEKLNKRTIEAKNKESDFVSDELVRMEEDASAEISMSVEETNKLR
EKLGLAPLKMEETKEEERTVIADDGTTVVEKVVSVDGKEFVHRPALNVTEKKAQDSFKEK
LQVQKERRLLHDRLLNVKLLAESDSGEDEEESALAWVQKSRTLEQERQLAEMKQYSSKDL
SGFTVLHAKDEFLEGRETVLVLQDKDVLDDSEDVLINPTLVEQQQWKRNVENRKKKPDYD
PFEEEVDEFGMLKEKVLLKKYDDEIVGIKKESFKLGQDGAVDVSKEAALRELSKQLREGV
QSLNSAPLEIAREYYTTEEMAKFKKPRKRVKKQRKTNTETFEDLFLKSERQIDEDYGSRG
RGKGRTKENYELDNENSLKGEEIKLEAPTDKQEMNRLASLKNDLLKKPIGTGTELSLENV
VIEDEAEEEFNAILNRARKAKLAENMQQSFKFGAEKVVSALKNNTMTESDADSQQMQPGT
SGIIFDSVSEYCRGLGEIPTYGRSGNRDSRELVSLDLVKNKIVKTENVGEESNWVMKDLT
QEEQSESGSSDGDDVLDVKPILEEEPEARRSVAAALQLAFRKGYLDKDKKGFDQDAQLQH
LKAKRYTILDKQFNDIDDKYAKKLERMGGSGHGGPIVDFKEKKNYVPNVKLEYADEHGRL
MDAKDAFRYLSWKFHGKAPGKKKVEKRMKKIMETELMNEMSSTDTPLGTLEKQIHKQRRL
QTPYIYLSGGGCKDIGSYILIHSVCAVSLSNMFS
NT seq 3345 nt   +upstreamnt  +downstreamnt
atgtggcatccggagcactttgtctgcgcccactgcggccaagagctgggcaggcagaat
ttctacgagcgcgcctgcaacgcttattgcgaaaacgactaccaccgactgttttcgcct
cgttgcgcctattgcaacggtccaatcaaggacaagtgcatcacggccatggaccgtacc
tggcatccggagcacttcttctgcgcccagtgcggtaagcagttcggcgaagaaggtttt
cacgtgaacaacggtcggccgttttgccgccaagattatttcgcatatttcgctttgcgt
tgccaagcttgccaacaaccgctgatgaacaactacatcaccgctttgaacgcccactgg
catccccactgttttgcctgtcacgactgcaaacagccgttcgtcggtggttcatttttc
gagcatctcggcgaaccctactgtgaaacccactaccacgaaaaacggggaccgcgtgac
cgctgttgcaaacaaagaagtattggattcgagtttctgtgctacgcttttgaaaaaaca
attggaacaatgtcgcactctacgccgatggatagagacgccgcagtgaaggcaatagcc
gatcatatgcttcgaggttattgtatgcttgatgattattgcaaaacctgcgggggagtt
ttacttcaagatcgaaacaagaaaatattatgcgtctgttgcccggtaatggatactgaa
gaaaatgaagcagcgaaaagtgaacctgcacaagtggaagctgaagcaaaaccagcggaa
gagaagttgcagccggtcaaaagtatcagtttgcaatataagtatcaaccagtatcctac
ggtttggaaaaagtacgttcatgcttgatgcgtgagatggttgatgttgcagaagagttg
aataggtcgtcatcggttggcgaacgtcggaatctgttgcaacttattcaacaaatcagc
aaaactttgaagtcattagctaaacgaaaacgatccaaatctagctcggatcgagaagcg
gaagggggcaagaaacggttgaagaaaagtggtacaaagggtaaaaatgtgaaaaaacct
gtgcagcccaatgacgatgacaagattgaatcgacattcgatgattctgagaagctcaac
aaaagaacaattgaagcaaaaaataaagaatcagattttgtctcagatgagcttgtcaga
atggaagaagatgcgtcagcggaaatttctatgagcgttgaagaaaccaacaagctgaga
gaaaagttgggtctagcaccgttgaagatggaagaaacgaaagaagaagaacgaacagtg
atcgccgacgacggaaccaccgtagtggaaaaagttgtctcggttgatggaaaagaattt
gtccatcgcccggcattgaacgtgacggaaaagaaggcacaagattcgttcaaggagaag
ctccaggtgcaaaaagagcgtcgtttgcttcacgacagattattgaatgtgaaattgctt
gcggaatccgatagtggagaagatgaagaagagtctgctttggcttgggttcagaaaagc
cgaacattggaacaggaacgtcagttagctgagatgaagcaatattcctctaaagatttg
agcggatttacggttcttcatgcgaaagatgaatttttagaaggaagagaaacagtttta
gttttgcaagacaaagatgttttggacgatagtgaagatgtgttgatcaatccaacgttg
gttgaacagcaacagtggaagaggaacgttgaaaatagaaagaaaaagccagattatgat
ccatttgaagaagaagtggatgaatttggaatgttgaaagagaaggtgctgttgaaaaag
tatgacgacgagattgttggtattaaaaaggaatcatttaaattgggtcaagatggtgct
gtggatgtttccaaagaagccgctttgcgagagttgagcaaacagttacgtgagggtgtg
cagtcgttgaattcggctccgctagaaattgctcgcgaatattacacgaccgaagagatg
gcgaaattcaaaaagccacgcaaacgtgtcaaaaagcaacgcaaaaccaatactgaaact
ttcgaagatttatttttgaaatccgaacgacaaattgatgaagactatggaagcagagga
cgtggcaaaggtagaacgaaggaaaattatgaattggataatgagaacagtttgaaaggt
gaagaaattaaactggaagcaccaacagataagcaagagatgaatcgtcttgcatcactg
aagaacgacttgttgaagaagccgattggaactggcaccgaattgtcattggagaatgtt
gtaattgaagatgaagctgaggaagagttcaacgcaattttgaatcgtgcaagaaaagca
aaattagccgaaaacatgcaacaaagcttcaaattcggtgctgaaaaggttgtcagtgca
ctgaaaaataatactatgacggaaagtgatgcagattcacaacagatgcagcctggcact
tctggaataatttttgactcagtatccgaatattgtcgtggtttaggcgaaattccaact
tatggacgttcaggcaatcgtgattcccgggaattggttagcttggatttggtgaaaaat
aaaattgtcaaaactgaaaatgtcggagaagaaagcaactgggtaatgaaagatttgacc
caagaagagcaatccgaatcaggttcttcggacggcgatgatgtgctggatgtgaaacca
attttggaagaagagcctgaagctagacgcagtgttgcggcggcattgcaactcgctttc
cgcaaaggctatttggacaaggataagaaaggctttgaccaggatgcgcagttgcaacat
ttgaaagcgaaacgttacaccattttagacaaacaattcaatgatattgatgataaatat
gcgaaaaagttggaacggatgggtggaagtggtcatggtggaccgatagtcgatttcaaa
gaaaagaaaaattacgttccgaacgtaaaattggaatacgcagacgagcatggtcgattg
atggatgcgaaggatgctttcagatatttatcttggaaattccacggcaaagcgcctggc
aagaagaaagttgaaaaacgcatgaagaagattatggaaacggagctgatgaatgaaatg
agctctacggatacaccgttgggcactttggaaaagcagattcacaagcagcgacgactg
cagactccttatatttacttaagcggaggtggttgcaaagatatagggtcatatattctc
attcattcagtttgtgcagtttcattgagtaatatgttcagttga

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