Trichinella spiralis: Tsp_03865
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Entry
Tsp_03865 CDS
T01609
Name
(RefSeq) putative ATP-dependent RNA helicase DHX35
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_03865
Enzymes [BR:
tsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Tsp_03865
Spliceosome [BR:
tsp03041
]
Complex C
Other components
Complex C specific factors
Tsp_03865
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG7_N
ThiF
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
ResIII
OB_NTP_bind
Helicase_RecD
nSTAND3
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
10910838
NCBI-ProteinID:
XP_003374672
LinkDB
All DBs
Position
Unknown
AA seq
1397 aa
AA seq
DB search
MATVETEEVKLLRFDPFKSTFHPAFWDAVTTKKLEEWKLDETPKHVVGYYQNTTRSVLPS
YFSLDFNSLDPAPKVAGNSFVVHGLLYILNTLEKFAAVDKKELMTDIGKQREIWNDIDTK
VWLQNPSLLNRFILLVHIDAKKYLYDFMIGFPAFNVSDMFFASEPEQFSKLDVDFMKAIQ
RVCLEAQRDLLPYFVILKQDDEYVLKMLNDPICETVTEDKIFLAFADPSASPKYAGWPLR
NFLKAWKVFRPDFTYVRVICWRYTSFNSIDQPTNSLLLHISMQCDKDAIATFLPVVGWEK
NSEGKVKSVHMDLSAQMDPNKIAQSASKLNLHLMRWRIVPELNLSLHWQTSCLLFGAGTL
GCNIARCLGAWGFGRITFVDNGRVSYSNPARQSLYSIKDCIGGRKWKCEAAASALKDIYP
DMEIAGERMTVPMPGHFVDIEGEKEQSFAEDVNRLERLVSTHDIIFLLFDTREARWLPTL
LSCLHNKIAITVALGFDSYLILRHGFGCGKKSATDDSDVHSPLQNVESTTSASGTNLACY
FCCDVTAPGNSTRDRTLDQQCTVTRPGVSMIASGLACELVTSLIQHPLQGQAPVEKPDSG
ANRSCLGVIPHQIRGYVNRFDQWNLTVERFASCIACSEPVIDQYKRGGFRFVADVCNDPT
LLETITGLDRLKDDAKDMLVIELAERMIRPDEKLLENWKNQTTSSIKSIEDRLLLDEVGV
EVNTGILYNTNLTAFSVQQQRVRLPIYKNRDVILYLIEKYQTLIIFGETGCGKSTQIPQY
LLEAGWAEKQKICVSEPRRVAAVTLATRVAEERASILGHEVGYVVRFDDFTQSDKTRIKF
MTDGILVREIMKDPLLNQFSVVIVDEAHERNINTDITLGLLRKIIAKRPELRLIISSATL
DAKEFHNFFNINDSDDPSRNTSFILSVEGRTCPVDVFHLKRPIPDYVKASVITAINIHRT
EPPGGDILIFLTGQDEVVNCCDMLKEESKKLKGYDRLWIVPIYGALPFKEQIKVFDSSPS
GTRKVTVATNIAEASITIPGVVYVIDCGFVKMRALHPDTGIESLMIVPISQASAQQRSGR
AGRIRPGKAFRLYPESEFDKLRAFTVPEIQRIHLAPALLQLKALGINNVLRFHYLSRPPA
MSMSRGLELLLALGAIDEDGKLTSPLGVQMAELPLPPMHAKALLVSGSLHCSEELLSIMA
MLQVQDIFLSPFGSKHKAAGKTQRWCAEHYVNYKGLCRATEIRAQLLTFLRRFKIPIVRR
LDAIDRIKQALVSGFFSCAAKLDHTGTYRTIRENFPLKISKGSALMYRNEYPKWYIYLDL
YSYSCTGLSLIANLFQGSYSMKSCKILCAILQQSIRNGCMNWLHIFTNMERQANEVLNKR
MKVIKTEVGSLETANDK
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggctactgttgaaacggaggaagtaaagttacttcgctttgatcccttcaaatctaca
tttcatcccgctttttgggatgctgtgacgactaaaaaacttgaagagtggaaactggac
gaaacacccaaacatgttgtcggatattatcagaacactactcgaagtgtactgccaagt
tatttttctctcgactttaattcacttgacccggcacccaaagtagcaggcaacagcttt
gttgttcacggtttgttgtacatcttgaatacgctggaaaaattcgctgcagtggacaaa
aaagaactgatgacagatattggaaagcagagagagatttggaatgacattgacaccaaa
gtttggctccagaatccatcactgctgaatcggttcattttattagtgcacatagacgca
aaaaaatatctttatgattttatgattggttttccagcttttaatgtttctgacatgttt
ttcgcctctgaacctgaacagtttagcaagcttgatgttgactttatgaaagcaattcag
cgtgtctgtctcgaagctcaacgggatcttcttccatattttgtaatattaaaacaagac
gatgaatatgttttgaaaatgctgaatgatccaatatgcgagacagtgactgaagacaaa
atatttcttgcctttgctgatccgtctgcttcgccaaaatatgcaggttggccgttgaga
aatttccttaaagcctggaaagtattcagaccagattttacttacgtgcgtgtgatttgt
tggcgttatacgtcatttaattcgatcgatcaaccgacaaacagcttactgttgcacata
tctatgcagtgtgataaggatgcaatagctacttttcttccagttgtcggatgggagaag
aattcagaaggaaaagtgaaaagtgtacatatggatctgagcgctcagatggatccgaac
aaaattgctcagagtgcaagcaaattgaatttgcatttgatgcgttggcgtattgttcct
gaattgaatttaagtttacactggcaaacatcttgcttgctgtttggtgccggcacgttg
ggttgcaatatagctcgttgtcttggagcatggggatttggtcgaatcacttttgtcgac
aacgggcgagtttcttacagtaatccggcaaggcagtcgttgtattcaattaaagattgt
atcggcggcagaaaatggaaatgcgaagctgctgcttcagcacttaaagatatttatcca
gatatggaaattgccggagaacgtatgacagttcctatgcctggccatttcgttgatata
gaaggcgagaaggagcagtcgtttgcagaagatgttaacagattggaacgactagtgtct
actcatgatattatatttctattattcgatacacgtgaagcccgatggttgccaactcta
ctgtcttgtcttcacaataagatcgcaataaccgttgcgttgggattcgattcgtatctt
attcttcgccatggatttggctgtggtaaaaagtctgccactgatgattcggatgttcac
agtccactacaaaatgtcgaatcgacgacttcagcaagtggtacaaatttggcttgttat
ttttgctgcgacgtcacggcgcctggcaattccacccgagatcgaactttggatcaacag
tgtacagtaacccgtcctggtgtgtcgatgatagcttctgggttggcttgtgaattagtc
acctcgttgattcagcatcccctgcaagggcaagctccggtcgagaagcccgacagcggc
gccaaccgatcctgcctgggcgtcattccgcaccagattcgcggctacgtgaatcgcttc
gaccagtggaacctgaccgtcgaaaggttcgcctcctgcatcgcttgcagtgagccagtg
atcgaccagtacaaacgcggtggtttccgttttgtcgccgacgtatgcaacgatccgaca
cttctggaaaccatcaccggacttgatcgtctcaaagacgatgccaaagatatgcttgtc
attgaactcgctgaacgaatgatcagaccggatgagaaattgttggaaaattggaaaaat
caaaccacatcttcgatcaaatcgatcgaagatcggcttctgttagacgaagttggtgtg
gaagtgaacactggaattttgtacaacaccaatttgaccgctttcagtgtccagcagcag
cgtgttcgactgcccatatacaagaacagagatgtcatactgtatttaattgaaaaatat
caaacgttgatcatttttggcgagactggttgcggtaagagtacacaaattccacaatat
ttgctcgaagcaggctgggcagagaagcagaaaatttgtgtttctgaaccccgtcgtgtt
gccgctgtgacgcttgcaacgagagtagctgaagagcgggcttcgattctgggacacgaa
gttggctatgtagtgcgtttcgatgacttcactcagtcggataaaacacgtatcaagttt
atgactgatggtattctcgtgcgggaaataatgaaagatcctttgttaaatcagttcagt
gttgtcatagtggacgaagcgcatgaacgaaacatcaacacagatatcacccttggattg
ttgcgtaaaataattgcaaaacgacctgaattacgcttgattatttcttctgcaactttg
gatgcaaaagagtttcacaacttcttcaatataaatgattctgatgacccaagccgtaac
acttctttcatattgtctgtagaaggtcgaacttgccctgttgacgtatttcacttaaaa
cgcccaattccggactacgtcaaagcatccgttattacagcaattaatatacatcgaaca
gagccaccaggtggagatattttgatatttttaactggccaagatgaagtagtcaactgt
tgcgacatgctgaaggaagagagtaaaaagttgaaaggatacgatcgactttggattgtg
cccatttacggtgcgctgccgtttaaagagcagatcaaagtgttcgattcttccccttca
ggaacacgaaaagttaccgttgctactaacattgctgaagcatccattactattcctggc
gttgtttatgttatcgactgtggttttgtgaaaatgcgagcactgcatccggatactggc
atcgaatcgctgatgattgtgcccatttcacaggcatcagctcagcagaggtctggtcgc
gctggtcgcatccgtcctggtaaagcattcagactttacccagaatctgaattcgataag
ctgcgtgcatttaccgttcccgagattcagagaattcatttggcacctgctttgttgcag
ctaaaagcgttgggcattaacaacgtgcttcgtttccattatttatcgagacccccagcg
atgtcaatgagtcgaggcttagaattacttttagcacttggtgcaatagatgaagatgga
aaattgacttctccgttaggtgtacaaatggctgaacttccactgccccctatgcacgcc
aaagctcttttagtatctggctcgttgcactgtagtgaagagctgttgagcatcatggca
atgcttcaggtgcaagatatatttttatctccatttggaagcaaacacaaagcggcagga
aaaactcagcgatggtgtgcagagcattatgtgaattataaaggtctgtgccgtgcaacg
gaaattcgagctcagctgttgactttccttcgtcgattcaagattcccatcgtcaggcga
ctggacgctattgatcgcatcaagcaagctttggtgtcaggatttttcagctgcgccgcc
aaacttgatcacacgggtacatacagaacgattcgagaaaattttccactaaaaatttcc
aaagggtcagcgctgatgtatcgaaatgaatatcccaaatggtatatatacttggatttg
tattcgtacagttgtacaggattatcattaattgcaaatttgtttcaaggatcatattca
atgaagtcatgcaagattctatgcgcgatattacagcaatcgatccggaatggctgtatg
aattggctccacatttttacgaatatggaacggcaagctaatgaagtactgaacaagagg
atgaaagttattaaaacagaagttggcagtttggaaactgctaatgataaatga
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integrated database retrieval system
