KEGG   Trichinella spiralis: Tsp_03946
Entry
Tsp_03946         CDS       T01609                                 
Name
(RefSeq) putative acyltransferase
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
tsp  Trichinella spiralis
Pathway
tsp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Tsp_03946
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tsp03041]
    Tsp_03946
Spliceosome [BR:tsp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    Tsp_03946
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 Beta-prop_THOC3 WD40 Acyltransferase Beta-prop_WDR3_1st PRP4 Beta-prop_WDR3_2nd WD40_Gbeta WD40_WDHD1_1st WD40_CDC20-Fz WD40_MABP1-WDR62_1st Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st Beta-prop_DCAF4 Beta-prop_EML WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD40_like
Other DBs
NCBI-GeneID: 10904038
NCBI-ProteinID: XP_003374757
LinkDB
Position
Unknown
AA seq 590 aa
MENSSEDPAKKTLARLNQLTSIATAGSSEAPNIFKTDEHYTLESTTDSTREIMLAEFQRR
KRARMMTLPTDDYEVKALLRQLGHPICLFGEDKPDRRERLRKILSLMAEEEAHRILRREE
PAVESQEDETTWYHEGSEALKSARIFIAQYSLPRAKERLLKAREQKNIPGQERAIRLQET
HKWISVIFVFLYFVNFPTVTNFSSQIGDVRPVVYCDFSPDSKFIATAGWSGLCKIWSVPD
CKLVKELRGHSVSACCVRFHPKYEENHMLIGSCDQEGRVKLWSMNEEKPLLDIDDCAPYR
VSRLAFHPSGRFIAYTWYFGLNNNFICSFFILYSFDCSWRLYDVEVKQEILYQEGHSKSV
YDIAFQCDGSVALTGGLDAYGRVWDLRTGRCVMFLESHQRSILTVDFLPNGMVRYVLYWV
ERLYQLKIIVRGASHLESSQPLIVVCNHQSSLDIIPMMRIWPERCAPLAKKSLKYMGFFG
IASILCGCVFIDRFDKNNARKVISSTLKHIIEQKIPIVPVVFSSYRNFYSKLERRFDSVS
PDDCKAVGFTPNLVCSSCSELSQYGLKELEPNCRQCCAKDELYDAINQLL
NT seq 1773 nt   +upstreamnt  +downstreamnt
atggaaaactcctcggaagacccagcaaagaaaaccttggccaggttgaatcagctcact
tccatagctacggcaggttcatccgaagcgcccaacatattcaagacagatgagcattac
actttggaaagcacgaccgattctactcgagaaatcatgttggcggaatttcaacgtcgc
aaacgagctcgtatgatgacactccccactgacgattatgaagtgaaggcgcttcttcga
cagctcgggcatccgatatgtctttttggagaagacaaacccgatcgacgagaacgtttg
agaaagattttatcattaatggccgaagaagaggcgcacagaattttgaggcgcgaagag
ccagctgttgaaagtcaagaggacgaaactacttggtatcatgaaggaagtgaagcttta
aaaagtgctcgcattttcattgcacaatattctcttcctcgagcaaaggaacgtttatta
aaagctcgggagcaaaaaaatattccaggccaggaaagagcaattcgacttcaagaaact
cacaagtggatttctgtaatttttgtttttttatacttcgttaactttccgactgtcacc
aactttagtagccagattggtgatgttcgaccagtagtttattgtgatttcagtccagat
tcaaaattcatcgctacagctggttggagtggattatgtaaaatttggtctgttcctgac
tgtaaattggtgaaagaattgcgcggtcacagtgtcagcgcttgctgtgtccgttttcat
ccgaaatatgaagaaaatcatatgcttataggtagctgtgatcaagaaggtcgtgtaaaa
ctgtggtcaatgaatgaagaaaagccattgctcgatatcgatgactgtgcaccttatcgc
gtttctcgtcttgctttccatccttctggaagatttatagcctatacatggtattttgga
ttaaataataatttcatttgttcatttttcattttgtacagttttgattgttcttggcga
ctgtacgatgttgaagtgaagcaagaaatattgtaccaagaagggcacagcaagtcagtt
tatgatattgcatttcagtgcgatggttctgtggctttgacgggaggtttagatgcgtat
ggccgtgtatgggatttgcgtacaggtcgttgtgtaatgtttctcgagagtcatcaacgt
tctatccttactgtggattttttaccgaatgggatggttcgatacgttttatactgggta
gaacgcctgtatcagctgaaaattatcgtgcgtggagccagtcatctcgaatcttcgcag
ccgttaattgtcgtttgcaatcatcagagttctctagatattataccgatgatgcgaatt
tggccagaacgttgtgcaccattggcaaaaaaatcactgaaatatatgggtttctttgga
atagcgtccatactttgcggatgcgtatttatagatcgtttcgataaaaacaacgctcgg
aaagttatcagcagtacattgaagcatataatagagcaaaagataccaattgtacctgtg
gtattttcttcatacaggaatttttacagcaagttggagcgtcgtttcgattcggtctct
ccggatgattgcaaagcagtcggttttactcccaacttagtgtgcagttcttgctctgaa
ttatctcaatatggtttgaaagaactggagccgaactgtcgtcagtgctgtgcgaaggac
gaactgtacgacgctataaaccaacttttgtaa

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