KEGG   Trichinella spiralis: Tsp_03955
Entry
Tsp_03955         CDS       T01609                                 
Name
(RefSeq) WD domain, G-beta repeat-containing domain protein
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
tsp  Trichinella spiralis
Pathway
tsp03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    Tsp_03955
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsp03021]
    Tsp_03955
   03036 Chromosome and associated proteins [BR:tsp03036]
    Tsp_03955
Transcription machinery [BR:tsp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     Tsp_03955
   Coactivators
    SAGA/TFTC/STAGA complex
     Tsp_03955
Chromosome and associated proteins [BR:tsp03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     Tsp_03955
    STAGA complex
     Tsp_03955
    TFTC complex
     Tsp_03955
    SAGA complex
     Tsp_03955
    SLIK complex
     Tsp_03955
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_THOC3 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_WDR75_1st Beta-prop_EML EIF3I Beta-prop_SCAP Beta-prop_WDR36-Utp21_1st NBCH_WD40 WD40_MABP1-WDR62_2nd ANAPC4_WD40 TFIID_NTD2 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_VPS8 Beta-prop_ACSF4 Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_Aladin Beta-prop_HPS5 Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_SPT8 WD40_like eIF2A Beta-prop_WDR41 WD40_RFWD3 Beta-prop_TEP1_C Beta-prop_WDR19_1st Beta-prop_RSE1_2nd Beta-prop_Nup120_160 Tricorn_2nd
Other DBs
NCBI-GeneID: 10904047
NCBI-ProteinID: XP_003374766
LinkDB
Position
Unknown
AA seq 599 aa
MRTANGTVDLQNIADVDDQMIVKCLNFFRVEGFFDAERTFVRELRNIGRSAAVDAYLQRV
GCTVNDNQLATVKSWNHWIEEYDYFFQYTKSKVDALCELSLLNFPLFTQLYIQLLKAGKM
KLASRFYDEFHSVQKESMQEYTKQLGWIHSSEQLADDWLIQILEEHNFVLCLCLACKSAL
NELMEKLPTIKDIIESKIQIECHGEVCRSEEQVEQISGYLLGEAPRQLNQIPILASCFDH
GGNDVPSWDRIPFPISRDEVILTNSDEIKKICLNDARPSVCFYTVLNPRVAVSSMVVSSD
STLLCVGNLDCSVEVFSLSKDLMEMLKPASQLPHTEDDLDPSSIFDSSSAQSKFSLFGHS
SPVYGVSFNRSGEFVLSCCLNGEIILWNLLTRTRIADYRMQMLKGLDVKFGPYDGYFVVS
DYHSGGALMWSMECETPVRAFIGHLSTVNCVAFHPNSNYIATGSNDRTVRLWDLLDGKCV
RLFTGHQDAIQSLYFSDDGHVLASGGLSGQVMLWDVAMAARLEGFKHSDRGVSGLAISRD
GSTVAWGGADQKVMLRSIGDNHKSEMPSVLTYRTKSAPVQHLHFTQENELIGFGGFCRD
NT seq 1800 nt   +upstreamnt  +downstreamnt
atgaggactgcaaatgggacagttgatcttcaaaatattgctgatgttgatgatcaaatg
atagtgaaatgtttaaatttttttcgcgttgaaggattctttgatgcagaacgtacattt
gtacgagaattaagaaatattggtcgttcggctgccgtagatgcatatttgcaacgtgtt
gggtgcactgtaaatgataatcagcttgcgaccgtgaagtcatggaatcattggattgaa
gaatatgattatttttttcaatacacgaaatccaaagttgatgcactgtgtgaattgagt
ctgcttaattttccactatttacacaactgtacattcaattattgaaagctgggaaaatg
aaattggccagcagattttacgatgagtttcacagtgtgcagaaggagtccatgcaagaa
tacaccaagcaacttggctggattcactcgtccgaacagttggctgacgactggttgata
cagattttggaagagcacaactttgtattatgtttgtgcttggcttgtaagtcggcattg
aacgagttgatggagaaactgccaacaattaaagacattatcgagagtaagattcaaatt
gaatgccatggcgaggtttgtcgtagtgaagaacaagtggagcaaattagcggatatttg
cttggtgaagcaccgagacagttgaaccagattccaattctagccagttgttttgatcat
ggtggtaatgatgtgccatcttgggacagaattccatttccaatttcgcgtgacgaagtg
atactcacaaatagtgacgaaatcaagaagatctgtttgaatgatgcaagaccgtcagtt
tgcttctatacggtactgaatccacgagttgctgtttcctcgatggttgtcagttcggat
tcgactttactgtgcgttggaaatttggactgcagtgtagaggtgttttcattgagcaaa
gatttaatggaaatgttaaaacctgcatcgcagttaccgcatactgaagacgatctcgat
ccaagttcaatatttgatagcagttcagctcaatcaaaattcagcttgtttggtcattcg
agtcctgtttacggagttagcttcaatcggagcggtgaatttgtattgtcatgttgtttg
aatggagaaataatattgtggaatttgttaacaagaactcgaattgccgactatcgtatg
cagatgttgaaaggattggacgtcaagtttggtccttatgatggctatttcgtggtctct
gattatcacagcggtggcgcgttgatgtggagcatggaatgcgaaacaccagttcgtgca
tttattggtcacttgtccaccgtcaattgcgttgcttttcatccaaattctaattatatt
gccactggttcaaacgaccgaactgttcgtctgtgggatttgcttgatggcaaatgcgtc
aggctgttcactggtcaccaggacgcaatacagtcgttgtatttttccgacgatggccat
gttttggcatccggcggtctgagtggtcaagtaatgttgtgggatgtggccatggcagct
cgattggaaggttttaagcattctgatcgcggcgtcagtggattagccatttccagagat
gggtcaactgtcgcttggggcggagcagatcaaaaagtgatgctacgttcgatcggtgac
aatcacaaatctgaaatgccatctgttctcacataccgaaccaaatctgcgccggtgcag
catttacatttcactcaggaaaatgaattgatcggctttggcggattttgccgtgactaa

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