Trichinella spiralis: Tsp_03955
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Entry
Tsp_03955 CDS
T01609
Name
(RefSeq) WD domain, G-beta repeat-containing domain protein
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
tsp
Trichinella spiralis
Pathway
tsp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Tsp_03955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsp03021
]
Tsp_03955
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_03955
Transcription machinery [BR:
tsp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
Tsp_03955
Coactivators
SAGA/TFTC/STAGA complex
Tsp_03955
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
Tsp_03955
STAGA complex
Tsp_03955
TFTC complex
Tsp_03955
SAGA complex
Tsp_03955
SLIK complex
Tsp_03955
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR75_1st
Beta-prop_EML
EIF3I
Beta-prop_SCAP
NBCH_WD40
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
TFIID_NTD2
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_SPT8
eIF2A
WD40_RFWD3
Beta-prop_TEP1_C
WD40_like
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
10904047
NCBI-ProteinID:
XP_003374766
LinkDB
All DBs
Position
Unknown
AA seq
599 aa
AA seq
DB search
MRTANGTVDLQNIADVDDQMIVKCLNFFRVEGFFDAERTFVRELRNIGRSAAVDAYLQRV
GCTVNDNQLATVKSWNHWIEEYDYFFQYTKSKVDALCELSLLNFPLFTQLYIQLLKAGKM
KLASRFYDEFHSVQKESMQEYTKQLGWIHSSEQLADDWLIQILEEHNFVLCLCLACKSAL
NELMEKLPTIKDIIESKIQIECHGEVCRSEEQVEQISGYLLGEAPRQLNQIPILASCFDH
GGNDVPSWDRIPFPISRDEVILTNSDEIKKICLNDARPSVCFYTVLNPRVAVSSMVVSSD
STLLCVGNLDCSVEVFSLSKDLMEMLKPASQLPHTEDDLDPSSIFDSSSAQSKFSLFGHS
SPVYGVSFNRSGEFVLSCCLNGEIILWNLLTRTRIADYRMQMLKGLDVKFGPYDGYFVVS
DYHSGGALMWSMECETPVRAFIGHLSTVNCVAFHPNSNYIATGSNDRTVRLWDLLDGKCV
RLFTGHQDAIQSLYFSDDGHVLASGGLSGQVMLWDVAMAARLEGFKHSDRGVSGLAISRD
GSTVAWGGADQKVMLRSIGDNHKSEMPSVLTYRTKSAPVQHLHFTQENELIGFGGFCRD
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgaggactgcaaatgggacagttgatcttcaaaatattgctgatgttgatgatcaaatg
atagtgaaatgtttaaatttttttcgcgttgaaggattctttgatgcagaacgtacattt
gtacgagaattaagaaatattggtcgttcggctgccgtagatgcatatttgcaacgtgtt
gggtgcactgtaaatgataatcagcttgcgaccgtgaagtcatggaatcattggattgaa
gaatatgattatttttttcaatacacgaaatccaaagttgatgcactgtgtgaattgagt
ctgcttaattttccactatttacacaactgtacattcaattattgaaagctgggaaaatg
aaattggccagcagattttacgatgagtttcacagtgtgcagaaggagtccatgcaagaa
tacaccaagcaacttggctggattcactcgtccgaacagttggctgacgactggttgata
cagattttggaagagcacaactttgtattatgtttgtgcttggcttgtaagtcggcattg
aacgagttgatggagaaactgccaacaattaaagacattatcgagagtaagattcaaatt
gaatgccatggcgaggtttgtcgtagtgaagaacaagtggagcaaattagcggatatttg
cttggtgaagcaccgagacagttgaaccagattccaattctagccagttgttttgatcat
ggtggtaatgatgtgccatcttgggacagaattccatttccaatttcgcgtgacgaagtg
atactcacaaatagtgacgaaatcaagaagatctgtttgaatgatgcaagaccgtcagtt
tgcttctatacggtactgaatccacgagttgctgtttcctcgatggttgtcagttcggat
tcgactttactgtgcgttggaaatttggactgcagtgtagaggtgttttcattgagcaaa
gatttaatggaaatgttaaaacctgcatcgcagttaccgcatactgaagacgatctcgat
ccaagttcaatatttgatagcagttcagctcaatcaaaattcagcttgtttggtcattcg
agtcctgtttacggagttagcttcaatcggagcggtgaatttgtattgtcatgttgtttg
aatggagaaataatattgtggaatttgttaacaagaactcgaattgccgactatcgtatg
cagatgttgaaaggattggacgtcaagtttggtccttatgatggctatttcgtggtctct
gattatcacagcggtggcgcgttgatgtggagcatggaatgcgaaacaccagttcgtgca
tttattggtcacttgtccaccgtcaattgcgttgcttttcatccaaattctaattatatt
gccactggttcaaacgaccgaactgttcgtctgtgggatttgcttgatggcaaatgcgtc
aggctgttcactggtcaccaggacgcaatacagtcgttgtatttttccgacgatggccat
gttttggcatccggcggtctgagtggtcaagtaatgttgtgggatgtggccatggcagct
cgattggaaggttttaagcattctgatcgcggcgtcagtggattagccatttccagagat
gggtcaactgtcgcttggggcggagcagatcaaaaagtgatgctacgttcgatcggtgac
aatcacaaatctgaaatgccatctgttctcacataccgaaccaaatctgcgccggtgcag
catttacatttcactcaggaaaatgaattgatcggctttggcggattttgccgtgactaa
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integrated database retrieval system
