KEGG   Trichinella spiralis: Tsp_04007
Entry
Tsp_04007         CDS       T01609                                 
Name
(RefSeq) putative RNA-binding protein
  KO
K12876  RNA-binding protein 8A
Organism
tsp  Trichinella spiralis
Pathway
tsp03013  Nucleocytoplasmic transport
tsp03015  mRNA surveillance pathway
tsp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Tsp_04007
  09122 Translation
   03013 Nucleocytoplasmic transport
    Tsp_04007
   03015 mRNA surveillance pathway
    Tsp_04007
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_04007
   03041 Spliceosome [BR:tsp03041]
    Tsp_04007
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     Tsp_04007
Spliceosome [BR:tsp03041]
 Complex C
  Other components
   EJC/TREX
    Tsp_04007
SSDB
Motif
Pfam: RRM_1 RRM_PARP14_3 RRM_occluded
Other DBs
NCBI-GeneID: 10904262
NCBI-ProteinID: XP_003374819
LinkDB
Position
Unknown
AA seq 228 aa
MEEEVSATYVSDEELDDGKMCYIFYNAVKFRHGSFVIEVEDMKDDYTSDNAGFDVPRRRR
QLSGDEDDVDEVITEDDIQDDTAVTIQQFRGRGMKSLCFLSSICFAFVKEFLNVEANRIG
DEEGEDEERVLSKPVPSVDGWTIIVSNLHQEAEEDEIKQAFEDFGPVKTINILLNRETGY
LTGVAIIEYEVYDMALEAVQTMNGATFLGKKLKVDWLFIEKPKLTSRA
NT seq 687 nt   +upstreamnt  +downstreamnt
atggaagaggaagtttctgccacttatgtttctgacgaggagctcgatgatggtaaaatg
tgttatattttttacaatgcagtgaagtttcgtcatggtagttttgttatagaagttgaa
gacatgaaagatgattatacgtcagataatgccggcttcgatgtcccacgtcgccgccga
caattgtctggtgatgaagatgacgttgatgaagtcatcacagaagacgatattcaggat
gacacagcagtcacaattcagcagtttcgtggtcgtggcatgaaaagtttgtgtttttta
agtagtatttgttttgctttcgtaaaagaatttttaaatgtagaagcaaatcgaattggt
gatgaggagggcgaagacgaggaacgtgttttgagcaaacctgttccatctgttgatggc
tggacaatcatcgtcagcaatttgcaccaggaagcagaagaagacgaaataaaacaagcg
ttcgaagatttcggtccagttaaaacaatcaacattctgcttaaccgcgaaactggatat
ctgactggagtcgccataattgaatatgaagtatatgatatggcactggaagctgtgcag
acaatgaacggcgctacgtttttaggcaaaaagttgaaagtagactggcttttcattgaa
aaaccaaaacttacaagtcgtgcataa

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