Trichinella spiralis: Tsp_04158
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Entry
Tsp_04158 CDS
T01609
Name
(RefSeq) putative Sec63 domain protein
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_04158
Enzymes [BR:
tsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tsp_04158
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
Tsp_04158
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_C
ResIII
AAA_22
T2SSE
Motif
Other DBs
NCBI-GeneID:
10904744
NCBI-ProteinID:
XP_003374974
LinkDB
All DBs
Position
Unknown
AA seq
1337 aa
AA seq
DB search
MIFVHSRMATSRLATVLLELASQKGHLADFRTGVPICPPFISRVVENSTCPEFKRLFPDG
FGIHHAGLLFRDRILIQQFFRTGRIRVLCCTSTLAWGINLPAHAVIIRGTEVYDGDKSTF
VNLGILDVLQIFGRAGRPQYDTSGCGIIITDYLHMNHYLRLLTRQIDIESQFLSRLAENL
NAEICLDTVSTVQDAIEWLSYTYLFVRAKVNPLVYGLTQVELSRDPELIEYRRSIIVDAA
RQLESLRMIRFDETNGYFFPTDLGRIASLYYINCNTVETFSRSISDSMTDQDILHVISSA
SEFSQLVVRDKELSELDELKKYCKLPIGVGCENVAGKVNVLAQCCIVRAETKTFSLSCDC
NYVLQNFPRLLRFVFDLALINDWPNLAYNALRLSKSMERRLWWFRHPLWQLNFLKADVVK
KLEEKKLTVDRLFEMDAQSIGTMIHDDGDQVLKACNHLPILNVDATVQPITSSILRITLN
IIPDFEWNQELFDCSVLKFHIWISNPDQNRILHREEILFTRRQVKMRQPLKLVFIIPAAN
PLPAYYLVFWDSNNFLGCDYEDAIPFGNVILPAERQQRTALLDLQPLPVSALNSPLLELM
YRFSHFNAIQTQVFHTIFHTDSNVLVGAPTGSGKTVIAELAIFRLFQKELSLKSVYIAPL
KALVRERMNDWKTRFEELLGKRVVELTGDTSPDIQALSNADVVVTTPEKWDGISRSWHSR
AYVKQVGLIVIDEIHLLGEDRGPVLEVIVTRTNFITASTKRPVRIVGLSTALANASDLAD
WLGIGKVGMFNFSPSVRPVPLEVHISGFPEKHYCPRMATMNKPAFKAIKVYSPEKPVLIF
VSSRRQTRLTSFDLIAHLAADANPKQWLNMTNEELQNYIQLVHDPNLRICLSFGIGIHHA
GLHEHDRSIVENLFSSLKIQVLVSTATLAWGVNFPAHLVIIKGTEYYDGKLGRYVDFPVT
DVLQMIGRAGRPQYDSEAVAVVFVHDVKKPFYKKFLYDPFPVESSFYGVENLDKGKVQSY
LVNVIFSALSALLQSKCITVEEDMNTIYSTVPGRIASFYYLHHATVAMFLRQIQCNSTYE
DLLMLLTVKFSSLFPILIEISTTTVLSIDLSFSKYLNTMKFQELATKCAILLNDSAFDNS
HTKTHLLYQAHLQRLELPNIDYETDLKSVLDQSIRILQAMVDISAERGWLATTLRVIGLM
QMIVQARWITDPPLSTLPHVSLYTARCSNISWNPVTVGEECVLCVELQSLNLRQDSRAYA
PKFPKAKHESWFLVLGCIDSGEILALRRVASFLSQTIVNLSFTAPKTVGRCICTLYLMSD
SYIGLDQQYDVHLNVEE
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atgatttttgtgcattcacgaatggcaacgagccgtttggcgactgtgcttttagaactg
gccagtcagaaaggacatttggcagattttcgaacaggggttccgatatgtcctccgttt
atcagccgggtggtagaaaattcaacatgtcctgaatttaaacgactatttcctgatgga
ttcggcattcatcacgctggtttgttgttccgtgatcggatacttattcagcaattcttt
cgcacgggtcgtatccgagttctctgctgtacgtctacgcttgcctggggtataaattta
cctgcgcatgctgttattattcggggaacagaagtctacgacggagataagagcacgttc
gttaatttgggaatattggatgtgttgcaaatttttggtcgagctggtcgccctcagtac
gacactagcggttgcggtataatcataactgattacttgcacatgaatcattatcttcgc
ctgctgacgcgtcaaattgatattgaaagccaatttttatcacgtctagcagaaaatctc
aatgcagaaatttgtttggatacagtttcgacggttcaggatgcgatcgaatggttgagc
tacacttatctttttgttcgcgcaaaagtcaatcctcttgtctatggtctgacacaggtc
gagctatcgcgagatccagagctgattgaatatcgtcgttcgattatagtcgacgctgcc
agacagttggaatcgttgcgcatgatacgtttcgatgaaactaatggatactttttccca
acagatttgggtcgtatagctagtctttattacattaattgtaacacagtggaaactttc
agtcgttcgatatctgacagtatgactgatcaagatattttgcacgtgatttcctcggct
agcgaattctcacagttggtggttcgtgataaggaattgtcagagcttgatgaactaaag
aaatattgcaagttgcccattggtgttggatgtgaaaatgtagcgggcaaagtgaacgtg
cttgctcaatgttgcatagtcagagcagagaccaagacgttttcactgagttgtgactgc
aattatgttttacaaaatttcccacgacttttacgttttgtatttgatttggcgttgata
aatgattggccaaatttggcatataacgcgcttcgactgtccaaatcgatggaacgtcga
ctttggtggtttcgtcatccgctgtggcagctgaatttcttgaaagcggatgtagtgaaa
aaattggaagaaaagaagttgactgttgatcgtctgtttgaaatggatgcacaaagtata
ggaacgatgattcacgacgatggtgatcaagtgttgaaagcgtgcaaccatttgcctata
ttgaacgtcgatgctacggtgcaaccgatcacaagttccatcttgagaatcacattgaac
attattccggatttcgaatggaatcaagaattgttcgattgttcagtgttgaaatttcac
atttggatcagcaatccggatcagaatcgtattttgcaccgagaagaaattttattcact
cgtcgacaggtaaaaatgcggcaaccgttgaagttggttttcatcattccagccgccaat
ccattgcctgcttattaccttgtcttttgggattcgaacaattttctcggttgtgactat
gaagatgctattccatttggaaatgttattcttcctgcagaacgccagcagcgtacagcg
ctgctcgatttgcaaccgttgccagtgagtgcgttgaacagtccattgctcgagttgatg
tacaggttcagccatttcaacgccattcagacccaagtgtttcacaccattttccatacc
gatagcaacgttcttgtcggtgccccaactggctctggtaaaactgtcatcgcagagctg
gcaatatttcgtctatttcagaaggagctttcattgaagagcgtgtacattgcaccgttg
aaagcattggttcgagaaaggatgaacgattggaaaacacgattcgaagaattgctcggc
aaacgagttgtagaattgacaggcgacactagtccagatatccaagctttgtccaatgct
gacgttgtagtgactacgccggaaaaatgggatggcatatccagaagttggcattccaga
gcctacgtgaaacaagttggtctgatcgtgattgacgaaatacatctgttgggcgaagac
cggggacccgtgttggaagtgatcgtcactagaacaaatttcattactgcttcgacaaaa
cgacccgttcgaattgttggcctgtcaaccgctttagccaacgcttcggatctagctgac
tggctcggtattggtaaagttggcatgttcaatttttcaccttccgttcgtcccgttcct
ctggaagtgcatatatctggctttccggaaaagcattattgtccaagaatggcaacgatg
aacaaaccagcctttaaagcaattaaagtttattcacctgaaaagccagtgttgattttt
gtatcttcacgacgtcaaactcgcttaacaagctttgatttgattgcgcatctcgctgcc
gatgctaatcctaagcagtggttgaacatgaccaacgaagaattacaaaattacattcaa
cttgtgcacgatccgaatctcagaatatgtttgtcttttggtattggtatccatcatgct
ggcttgcacgaacatgaccgtagcattgtggagaatttgttttcctctctgaaaatccaa
gttctcgtctctacggctactttggcttggggtgtcaattttccggctcatttggtcatc
atcaaaggcactgaatattacgacggcaaattgggccgctacgtcgattttcccgttaca
gatgttttgcaaatgatcggacgtgccggacgaccgcagtatgattccgaagctgtcgca
gttgtttttgtccacgatgtgaaaaaaccgttctataagaaatttttatacgatccattt
cctgtcgaatcgagtttttatggtgtggaaaatttggataaaggaaaggtacagtcgtat
ttggtcaatgtgattttttccgctttgagcgctttgctccaatcgaaatgcataacagtt
gaagaggatatgaacacaatttattccaccgttcctggccgaatcgcgtcgttctattat
ttgcaccatgctacggtcgcgatgtttcttcgccagatccaatgcaattcgacatatgaa
gatttgctgatgcttttgacggtgaaattttcttctctttttccaatacttattgaaatt
tctacaacaactgtgctgtcgattgatctatcgtttagcaagtacctgaatacgatgaaa
ttccaagaattggcgactaaatgcgcgatattactgaacgactcggcgttcgacaattcg
catacaaaaacgcatctgttgtaccaggctcacttgcagcgtcttgaattgcccaacatt
gactacgagacggatttgaaatctgttcttgatcagtcgattcgtatcttgcaggctatg
gtggatatttccgcggaacgaggttggcttgctacaacacttcgtgtgattggtttgatg
cagatgattgtccaggctcggtggatcaccgatccaccgttgagcacgctgcctcacgtt
agcttgtacacggcgcgatgttcgaatatttcctggaatccagtcactgttggtgaagag
tgcgtgttgtgcgtcgaattgcaatcattaaacttgcgacaagatagtcgtgcgtatgca
ccgaaatttcccaaagccaaacatgaatcttggtttttggtattgggatgtatcgatagc
ggggaaattttggcattgcgacgtgtcgcttcatttctatcccagacgattgtcaatttg
tcatttacagctccgaagacagttggtcgttgcatttgtaccttgtacttgatgagcgat
tcctatattgggctcgatcaacagtacgatgttcatttgaatgttgaagaatag
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