Trichinella spiralis: Tsp_04166
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Entry
Tsp_04166 CDS
T01609
Name
(RefSeq) hypothetical protein
KO
K17890
autophagy-related protein 16-1
Organism
tsp
Trichinella spiralis
Pathway
tsp04136
Autophagy - other
tsp04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
Tsp_04166
04136 Autophagy - other
Tsp_04166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsp04131
]
Tsp_04166
03029 Mitochondrial biogenesis [BR:
tsp03029
]
Tsp_04166
Membrane trafficking [BR:
tsp04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
Tsp_04166
Others
Specific organelles associated proteins
Auto phagosome
Tsp_04166
Mitochondrial biogenesis [BR:
tsp03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
Tsp_04166
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_EML
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_NWD2_C
Beta-prop_SCAP
WD40_like
ATPase_2
NACHT
ABC_tran
AAA_22
Motif
Other DBs
NCBI-GeneID:
10904752
NCBI-ProteinID:
XP_003374982
LinkDB
All DBs
Position
Unknown
AA seq
576 aa
AA seq
DB search
MRSLKLQYELAEAAEPFVQIDDMENIWCSYYDIVFESHQMIEVHLEKIHRRRQYLILVEA
HDGEVLTLCWGRCGKILATGGTDRRLKLWEIVDGQHGRPATLMGCNQAVTCADFDLNGSL
VLAGSNDFATRIWSVADQRLRHSLTGHSGKVLCAKFVTGGRVITGSHDRTIRIWDLQGYR
TLLSASTCYDLVAVGNSQSMLISGHFDKKIRFWDDRCQHVVKDMQVGGKITSLDVANDDV
NLLCTTREDLIYCIDLRQCLVKRSFGADGFKIGYDFVRGKFSPDSHYCICGSADGNVYIW
NAMSGKLETVLTNGHSSCVIASMWNLDGTVVATCEKQKFSMTFKYRTETGSQLFSRLNPK
PALSISLGGLFPDPLQPKHIVEIVGGSGSGKTLLLLEVGVLLLDCDRHFCLSALVNVLSM
RNPGAKDEQALLNCLNRLHSIVCRNGEDLWHSLDFADKIVHRTASLMNVIIIDSVSAFSL
TSAGNLREKHERLVLKVRRTVEEHNLVAFITRQTVTRHPDRAEETGRHVSAILDHCWRKA
NTVRVQTHCFNWNQFQATVDNRIVHFRSINGRPCFN
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtttgaaacttcagtatgaattagccgaagcagctgagccgtttgttcaaatt
gatgacatggaaaacatatggtgtagttattatgatattgtttttgaatcacaccaaatg
atcgaagtgcatttagaaaagattcaccgtcgccgtcaatatctgattctagtggaagct
cacgatggagaagtgttgacattgtgctggggtcgttgtgggaaaattttagccactggc
ggaacggatcgacggcttaaactgtgggaaattgttgacggtcagcatggtaggccggct
acattgatgggatgcaatcaggctgtgacttgtgcggattttgatctcaacggaagtcta
gtgttggcgggaagcaatgatttcgccactcgcatctggagtgttgctgaccagcgactt
cgacactcgcttactggccacagcggcaaagttttgtgtgcgaaatttgtaactggcggt
cgagtgatcactggttcgcatgaccgtacgattcgaatttgggatcttcaaggctataga
acgttgctttccgcttcgacttgttacgatctggtggcggttggcaattcgcagtcaatg
ctgattagtggtcattttgacaaaaaaatacgtttttgggatgatcgttgtcaacacgtg
gtaaaagatatgcaagttggaggaaaaattacatctctcgacgtagccaacgatgacgtc
aatttactatgcactaccagagaagatttgatttattgcattgatttgaggcagtgtttg
gtgaaacgtagttttggggccgatggtttcaaaattggttatgattttgtcagaggaaaa
ttcagtcctgattcacactattgcatctgcggctcagcagatggaaatgtttacatatgg
aatgcaatgtcaggcaaattggaaacagttctaaccaacggacatagttcttgtgtaatt
gcatccatgtggaacttggatggaacagttgtggccacttgtgaaaaacaaaaattttca
atgacttttaaatatcgtaccgagactggtagtcagctgttttcacgtttaaatccgaaa
ccagctttatcgatatctctgggaggtctgtttcctgacccattgcagccgaagcatatt
gtggaaattgtcggcggcagcggctctgggaaaacgttgcttctgctggaagtaggtgtg
ctgctgttggactgtgatcgtcatttttgtttatccgctctggtgaacgtgttgtccatg
cgtaatccgggtgccaaagatgaacaagctttgctgaactgtttgaatcgacttcactcg
atcgtttgccgcaacggcgaggatttgtggcacagtttggattttgccgacaaaattgtc
caccgtaccgcttcactgatgaacgtgataattattgacagtgtttcggctttttctctg
accagtgccggtaatttgcgcgaaaagcacgaacgtctggtcttgaaagtgcgacgcaca
gtcgaagagcacaatttggtcgctttcatcaccaggcaaacggtcaccagacatccagac
cgtgcagaagaaactggacgtcatgtttctgcaattttggaccattgttggcgcaaagcc
aacaccgtacgcgtgcaaacccattgcttcaactggaatcagtttcaagccaccgtggac
aatcgaattgttcattttcgatcgattaatggaagaccctgtttcaattga
DBGET
integrated database retrieval system
