Trichinella spiralis: Tsp_04197
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Entry
Tsp_04197 CDS
T01609
Name
(RefSeq) putative immunoglobulin domain protein
KO
K06762
contactin 4
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tsp04515
]
Tsp_04197
Cell adhesion molecules [BR:
tsp04515
]
Immunoglobulin superfamily
Contactins
Tsp_04197
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_6
UL45
Motif
Other DBs
NCBI-GeneID:
10904945
NCBI-ProteinID:
XP_003375013
LinkDB
All DBs
Position
Unknown
AA seq
1167 aa
AA seq
DB search
MNLYRSASIMVVIVLQLLFGQSTSARQIWHPFTCPKGWRENGTDCFRFLPDLLDKQNALQ
RCQNLLTFGNMFDQMAKVVQWDSKEKSFKETQKIEQILKSQKHSLKHYSCKFSLKEQKHG
LAVSKKDENEAKLNFLPLFAAPKLIHQPEDSLFFLDIPTQTVRLKCEAEYNPHIAHKPIY
SWHRGSGGPIHSAMDSRITQIEGELYIRNVSNKDVGSYFCKVKNHYGTVVSRKASVRTAL
SASYAWLYKTSNMFLQESERIFTAKDGTLYFSYYTKADEEQYACSLLISELQTGHYGPFF
RLRTKSETYPSQDGFSPYFPRELPRVWQSNQALEGKEIVLECFAFGRPSPTYQWIRVDKP
MDKQTVQFRSFSRQLRILNATVQHSGIYRCIADNEYGSVSKEVRLEVFASPKISSTTENY
VEEKGKTWTLWCEATGKPEVHYEWLKNGTAFNSLLLPQEDRKRILIDKNRLQIKHLREED
SGIYQCLAFNQFGQDILTTELYVRQTPDKIKWREFHKDFHVLENSDAILRCADRTGHWSS
RGQWIVGKSALQYDQRLSLSKAGDLLTIKNVTKRDSDTVYECRIAYRQAGIIQRFRLVVY
HDFYIRIRPANKHVLVGQNLTLSCKYAWTNNAGSTAEIAPWWSFNGYPIEQLRQFNSATL
LPLPGSGTQLTISPISLLHHGNYSCHVPILPLWTASASSEVTVEGAPLAPIEVIAQPQAN
SRIYLRWKIPNEQEKRTLPISKFRVESKTTYAEGWKIVKDDIRWNLNETTVERDILPFNK
YRFRVRAANSIGWSDASDATPWTETAPGPPSVIEDVQLSAQVYHTSQITIQWKMLPKHLW
GDSSLGYILEWRPVGDFRNTQTEKLPATTNSTLINLSYTVQTNETVPCKRYELYIRPYNN
YGEGPNTLPVYAIPVVKKPSSVYRVDAKALNATCVQLYLVDKVIVNQCEPVDWFEIFYWA
SADPNSKHFHKAPFILLKQGMPACNLTAETEYAFSAIASNSAGEAPASSLSLVKTYRPAP
SDIPICCSVSAADKIGFVTVGWRMSRRALEQDEILGYQVTFANSYKETERRVFDLPIDSG
LDFPPKMKLGPVKPTSAYTVTVKAYNVGGYGPSSKTALVLPSVLQSISSSGKLKASTILL
IINSCLCIYFVLVSHHTFHYVPFSFTF
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctatcggagtgcatcgattatggttgtgatcgtattgcagctgctgtttggt
cagtcgacatcagctaggcaaatatggcatcctttcacatgtcctaaaggatggcgtgaa
aatggcaccgactgttttcgctttttacctgatctgctagacaagcaaaacgccttgcaa
cgatgccaaaatttgctcacatttggcaacatgttcgaccaaatggcaaaagtagttcaa
tgggattctaaggaaaaaagtttcaaagaaacgcaaaaaattgaacaaattttgaaatct
caaaaacattcactaaagcattactcttgcaaattctcactgaaagaacaaaaacatgga
cttgcagtaagcaaaaaagacgaaaatgaagcaaaactgaattttctcccactatttgcc
gcaccaaagctaatccatcaacctgaagatagcttattttttttggatataccaactcaa
acagtgcgtttgaagtgtgaagctgaatacaatccacacattgcacataagccgatctat
tcttggcatcgcggatctggaggaccaattcattcggcaatggattcacgtattacccaa
atagaaggcgaactgtacatcagaaatgtgtccaataaggacgtgggaagttacttttgc
aaagtgaaaaatcattacggcacagtggttagtcgaaaagcatcagtacgaacagcattg
tcggcctcttatgcgtggttgtacaaaacatcaaatatgttcttgcaagaatcagaacgc
atcttcacggcaaaagatggtacactgtatttctcttattataccaaagccgatgaagaa
caatacgcatgcagtttactcatttccgaactccaaactggacactacggtcccttcttc
cgactcagaaccaaatcagaaacttacccatctcaggatggattttctccgtattttcct
cgagagttgcccagagtgtggcaatcaaatcaggcgttagaaggaaaagaaattgtgtta
gaatgcttcgcatttggccgaccaagtccaacgtatcaatggatacgtgtagacaaaccg
atggacaagcagacagttcaatttcgcagcttttctcgtcaattgcgtatactaaacgcc
actgtacaacatagtggcatataccgatgtattgcagacaatgaatatggttcagtgtcc
aaagaagtgcgtttggaagtattcgcttctccaaagattagctcaacaacagaaaattat
gtagaagaaaaaggaaaaacttggactctgtggtgtgaagcaaccggcaaacctgaagtg
cattatgaatggttgaaaaatggcactgcctttaactcactattattgcctcaagaagac
cgaaagaggatcttaattgataagaacagacttcaaattaaacaccttcgtgaagaagac
tctggcatttatcaatgcttagcattcaatcaattcggtcaagacatactcactacagaa
ctgtacgtaagacaaacaccagacaaaattaaatggcgagaatttcacaaagactttcac
gtattagaaaattctgatgcgattttacgctgtgcagatcgtacagggcactggtcaagc
cgtggacagtggattgttggaaaatccgcgctacagtatgaccaaaggttgtcgctatca
aaagctggtgatttattgacaatcaagaacgtaactaaacgagattccgacacagtctat
gaatgtcgtattgcctatcgtcaagcgggaataatccaacgctttcgactagtcgtttac
cacgatttttatattcgcatacgtccagcaaacaagcatgtacttgttggtcaaaatctt
acgttgtcttgcaaatatgcttggactaataatgccggttcgacggcagaaattgctccg
tggtggtcattcaacggatatccaatagaacagctcagacagttcaactccgcaacgctg
ctccctcttcccggaagtgggacgcaacttacaatatctccaataagtctgcttcaccac
ggaaattattcatgtcacgtacctattctaccgctttggactgccagtgcttcttctgaa
gtgactgttgaaggtgctccacttgctccaattgaagtcattgctcaaccgcaagccaat
agcagaatatacttgaggtggaaaattccaaatgaacaagaaaagaggactctccctatt
tcgaaatttcgcgtcgaaagcaaaactacttacgctgaaggttggaaaattgtcaaagat
gatattcgatggaatttaaatgaaacaactgtagaaagagatatactgccattcaataaa
taccgcttccgtgttcgagcagctaattcaatcggatggagcgatgccagtgacgccaca
ccttggacagaaactgctccaggtccaccaagtgttattgaagatgtgcaactcagtgca
caagtataccacaccagccaaatcactatccaatggaagatgctgccgaaacatctctgg
ggagacagttcgttaggatatattttggaatggcggccagttggtgatttcagaaatacg
caaactgaaaaactgcctgccaccacaaattctacgctcatcaatctctcatatactgtt
caaacaaatgaaacagtaccttgcaaaagatatgaactatatattcgtccatataataat
tacggtgaaggaccaaacacacttccggtttatgccatacctgttgtaaaaaaaccatct
tccgtgtaccgtgtagatgcaaaggcactgaatgctacgtgcgtccagctttatctggtc
gacaaagtgatagtgaatcagtgtgagccagttgactggtttgaaatcttttactgggca
agcgccgatcccaatagcaaacatttccataaggcgccctttattttgctcaagcaaggg
atgcctgcttgcaatctgaccgccgaaacggaatatgccttttcagcaatagcgagcaat
agtgccggagaggcgccggcatccagtctgagcctggtgaaaacttaccggccagcccca
tccgatatacctatctgttgttccgtcagtgcagcggataaaattggtttcgttacagta
ggctggcgcatgtcccgtcgtgctcttgaacaagacgaaatactcggctatcaggttacc
tttgctaattcatataaggagacggaaagacgagtattcgacttgcccatcgacagcggt
cttgattttccgcccaaaatgaaactcggcccggtgaaacctacttccgcctacactgta
acagtgaaggcttacaatgttggtggttatgggccatcatcaaaaactgcgctcgtactg
ccttctgtattgcaatccatttcttcaagcgggaaactgaaagcatcgacaatactactc
atcatcaacagctgcctgtgcatttatttcgttcttgtctcccatcatactttccattat
gtaccgttcagctttactttctga
DBGET
integrated database retrieval system
