Trichinella spiralis: Tsp_04288
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Entry
Tsp_04288 CDS
T01609
Name
(RefSeq) zinc finger protein ubi-d4 A
KO
K13196
zinc finger protein ubi-d4
Organism
tsp
Trichinella spiralis
Pathway
tsp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
Tsp_04288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_04288
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_04288
Spliceosome [BR:
tsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
Tsp_04288
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
Tsp_04288
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Amnionless
PHD
PHDvar_NSD
PHD_4
PHD_2
zf-H2C2_2
Motif
Other DBs
NCBI-GeneID:
10905199
NCBI-ProteinID:
XP_003375103
LinkDB
All DBs
Position
Unknown
AA seq
694 aa
AA seq
DB search
MYTLHPYQYQEPAWYEDYTELVGDEFDDPSDPDDYEEYSKRKRKKKATTKGGRKAHDSAN
PVERPYACPHCSMRYKTKPGLHYHVRHHHSDAVAGELPISTDTSGFPGASQQHQHSTSGT
STRMAPMRKAAAISASRIQRQGMVELSSTCDLCQGDIFENKRTGCAEQLINCSDCGRAGH
PYCLQFSSNMIISTKKYGWQCIECKSCAICGTSEHDEQLLFCDDCDRGFHMYCLTPKLFA
PPEGSWSCDLCLNEFHRDQRLTSLGQSSQTILFVTVLKVSGLIYEYLPNAANKTMSNSCL
ADTESLLALLPVSGSFNIANNITFNSTFELLFTADSLLTWDVGNCRPLSKADLPQLDNWH
DPEKWLVRNAPRPVLHSDRVPSMWDTVVFSNRHSYYINISTPVVVQRLIYHGQEHSSESF
ARHLNSVESKLQFLNGSKITSVPSITITKTNCQLFTGCVSNNIKDENMAAICSNVRCAKN
LPCSNSIRPVGHCCPICGALVTFTCDSSSNQQLVGQRSCSDLDWSFVFSKIRSDTCQLVV
TNSIDLDNYNADITSQCLNEVQKEFLLSKATEWTVSVAKWKNVNYVLLFCICIACLLTVL
GLWKRSYLSRMYSNQRIFWSVMWNRDTEDQVHLQMPAPSTSDLTVSDDCEKTSQNFENPI
YMHSLQNELEDNEELLLAAAAFYEIPSTLRTSYD
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtatacgttacatccgtatcagtatcaagagccagcgtggtatgaagattacacggaa
cttgttggtgatgagttcgacgatccatcggatccagacgattatgaagaatattcaaaa
cgtaaacgaaaaaagaaagccaccacaaaaggcggcaggaaagcccatgattcggccaat
ccggtcgagcgaccgtacgcttgtcctcattgctcgatgcgctacaaaaccaaacccggt
ctgcactaccacgtgagacatcaccactctgacgcagtagctggagaattacccatttcc
actgatacgtcaggtttcccaggtgcttcgcaacagcatcagcatagtacgtcaggaact
agcacccgcatggctcctatgcgtaaagcggccgcgatatccgcttcaagaattcaacgc
caaggtatggtcgaattgagcagcacatgtgatctttgccagggggacattttcgaaaac
aaacgcaccggttgtgcagaacagttgattaactgttctgattgcggtcgagctggccat
ccgtattgtttgcaattcagttccaatatgattatttcgacaaaaaagtacggttggcag
tgtattgaatgcaaatcatgcgcaatttgcggcacttctgagcatgacgagcagctactg
ttttgcgatgactgcgatcgtggttttcacatgtactgcttgacaccgaaattgtttgca
ccacctgaaggaagttggagttgcgatttatgcctgaatgagtttcatcgtgatcaacgg
ttgacatcattgggacagtcttcacaaaccatactgtttgtaactgttttgaaggtttct
ggactaatttatgaatatcttccaaatgctgcgaacaagacgatgagcaattcttgtttg
gcagataccgaaagtttgcttgcgcttcttcccgtatccggatcgttcaatatagccaat
aatattactttcaactctacttttgaacttcttttcactgctgatagtttacttacttgg
gatgttggcaattgtagaccactttcaaaggccgacttgccgcaattagacaactggcat
gatcctgagaaatggcttgttcgaaatgctccaagacctgttttacacagtgatcgcgta
ccttcgatgtgggatacggttgtgttcagtaaccgccacagctattatatcaacatatct
acaccagttgttgttcaacgattaatttatcatggtcaggaacacagcagtgaatcattt
gcacgtcatctgaacagtgtggaaagtaagttgcagtttttaaatggctcgaaaataacg
tcggtaccaagcatcactataaccaaaaccaattgccagttgtttacaggttgtgtcagt
aacaatattaaagatgagaatatggctgctatttgttcgaatgttcgctgcgccaaaaat
ttgccatgttccaatagtatccgcccagttggccattgttgtcccatttgtggcgctttg
gtcacttttacctgtgattcatcaagcaatcaacagctagttggtcagagaagttgttct
gacttggactggagttttgttttttcgaaaattcgatctgacacttgtcaactcgtggtc
actaacagcattgatttagacaactacaatgctgatataacttcacaatgtttgaatgaa
gttcaaaaggaatttttgctgtcgaaagcgacagaatggaccgtgtcggtagcaaaatgg
aagaatgtaaattatgttttactgttttgcatatgcatcgcttgtcttttgacagtgtta
ggtttgtggaaaagatcgtatttgtcaagaatgtactccaatcaaaggattttctggtct
gtaatgtggaatcgagataccgaagatcaagtacatttacaaatgccagcaccatccacg
tctgatcttactgtatctgacgattgtgagaaaacttcgcagaattttgaaaatccaatt
tacatgcacagtttgcaaaatgaactcgaagacaacgaagaattattactcgctgctgct
gcattttatgaaattccaagtacattgcgtacttcttatgattga
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integrated database retrieval system
