Trichinella spiralis: Tsp_04544
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Entry
Tsp_04544 CDS
T01609
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
tsp
Trichinella spiralis
Pathway
tsp03030
DNA replication
tsp03410
Base excision repair
tsp03420
Nucleotide excision repair
tsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tsp_04544
03410 Base excision repair
Tsp_04544
03420 Nucleotide excision repair
Tsp_04544
03430 Mismatch repair
Tsp_04544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsp03032
]
Tsp_04544
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_04544
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_04544
DNA replication proteins [BR:
tsp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
Tsp_04544
DNA Replication Termination Factors
ELG1-RFC complex
Tsp_04544
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
Tsp_04544
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
Tsp_04544
Check point factors
HRAD17(Rad24)-RFC complex
Tsp_04544
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
Rep_fac_C
RCF1-5-like_lid
DNA_pol3_delta2
AAA_assoc_2
AAA_22
AAA_11
AAA_30
AAA_16
DEAD
SLFN-g3_helicase
AAA_24
Gp44_lid
Mg_chelatase
AAA_28
RNA_helicase
AAA_5
MCM
KH_DUF2096_C
AAA_23
AAA_19
AAA_25
DNAX_ATPase_lid
AAA_7
Motif
Other DBs
NCBI-GeneID:
10912393
NCBI-ProteinID:
XP_003369118
LinkDB
All DBs
Position
Unknown
AA seq
357 aa
AA seq
DB search
MRDFSKELTITSSRPKIVDDIAYQDEVVAVLKKSLTSNDKLRLCLMILYFVEHLIRFANI
LDNYFIPNLLFYGPPGTGKTSAILALCRQIFGSEIYRDRVLELNASDERGIDVIRDKVKL
FSQFAASEITEGGKKCPPLKMVILDEADSMTKQAQAALRRTMERESKTTRFCLICNYISC
IIEPITSRCAKFRFKPLTLEIQIERLRKICENESVSIDDAALSSLISFCDGDLRRAINTL
QSAASFKDKKEIVQTDIEEICQIVPEEFVEQFIAICRKGSHENMEKLVLQLQREAYSAYQ
FIIQLHDKLIDDLMVSDLARAKFLSKLAVCENRILAGADETLQLMDLGTAGILYINI
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgacttttcaaaagagttaacgattacttctagtcgtccgaaaattgtggatgat
attgcttatcaagatgaagtagttgcggttttgaaaaaaagcctgacatccaatgataag
ctgcgtttgtgcttaatgattttgtattttgttgaacatttgattcgttttgcaaacata
cttgataattattttattccaaatttgttattttacggtcctcctggaacagggaaaaca
tcggcaattttagctttatgcaggcaaatttttggatctgaaatatatcgagatcgtgtt
ttggagttgaacgcgagcgatgaacgtggcatcgatgtcattcgtgataaagtgaagctt
ttttcccagtttgcggcatcggaaattactgaaggtgggaaaaaatgcccacctttgaaa
atggtcatattggacgaagcggattccatgacaaaacaagctcaggctgctttaagacga
actatggaacgtgaatcgaaaactacaagattctgtctaatatgtaactatattagttgc
attattgaacctataacttcccgttgtgcgaaattcagatttaaaccgctcacattggaa
atacaaattgaaagattgaggaaaatttgtgaaaatgaaagtgtaagcattgatgatgca
gctttatcatctctgattagtttttgcgatggcgatttgcgtagagctatcaatacactg
cagtcagcagctagctttaaagataaaaaagaaatcgttcaaaccgatatagaagaaatt
tgtcaaattgttccggaagaatttgtcgagcaatttattgcaatttgtcgcaaagggagc
catgaaaatatggaaaagctcgtgttacagcttcaacgcgaggcttacagtgcatatcaa
tttataatacaactgcacgataagcttattgacgatttaatggtcagcgatttagctcgt
gcgaaatttctttccaaattggcagtttgtgaaaatcgtattttggctggtgctgatgaa
actcttcagttgatggacttgggtactgcggggattttgtatataaatatttaa
DBGET
integrated database retrieval system
