Trichinella spiralis: Tsp_04818
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Entry
Tsp_04818 CDS
T01609
Name
(RefSeq) vacuolar protein sorting-associated protein 16-like protein
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
tsp
Trichinella spiralis
Pathway
tsp04140
Autophagy - animal
tsp04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
Tsp_04818
04148 Efferocytosis
Tsp_04818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsp04131
]
Tsp_04818
Membrane trafficking [BR:
tsp04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
Tsp_04818
Hops complex
Tsp_04818
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps16_C
Vps16_N
DALR_1
Motif
Other DBs
NCBI-GeneID:
10912679
NCBI-ProteinID:
XP_003369403
LinkDB
All DBs
Position
Unknown
AA seq
488 aa
AA seq
DB search
MRKGNLFFSFSCDDSSFAVCQEPDGLRIYSRNKHEFIRCVNKSAVEIFRVGSLSPAAFLV
VAHAEYTANNYKAFEYIRLILDQLPDAIQTCIEAATHFFDPSIQKRLLLAASFGKSFVPT
AEVDAYTNACRTLRILNAIREMNFAMPISYLQLKSLTLPNLINRLIAREQYPLAVSCCRC
LRLDSGIGVNRVVMHWASKIVCDKSISDERIVDRIKEKSTEFPDISFASIAEIAAQHKRM
DLATKMDIQLLNYEKNLERQVFMLMKLNRNEKALSKAAQSKDPELIYSVILHLRESFEKI
SDLSLIMRNFPIPFTLYKSLKCQIIIFVREISADNFRFLLEETDDFIGQALYHLKASNAP
VFDITDKVETLQLAEKCFRIAKENFCVSQLCDNIKLLKLQEELAEKFNDSSSLVDCSLQE
TIEWLICANEWNYVEMAKKEFKISDRQLFFFLKIKFVSSKNYQQIMLVEDASACQSIQMA
RFGKFCKT
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaagggaacttatttttcagtttttcatgtgatgattcgtcgtttgcagtttgt
caagagccagatggattacgaatttattcacgaaataagcacgaatttatacgttgtgtt
aacaaatctgctgttgaaatatttagagtgggttcgttgtcaccggctgcttttctcgtt
gttgctcatgcagaatatactgcaaataattacaaagcattcgaatatatacgtttaatt
ttggatcaattaccggatgctattcaaacgtgcatcgaggcagcaacgcattttttcgat
ccatctatacaaaaacgattgcttttggcagccagttttggaaaatctttcgttccaact
gctgaagttgacgcttacacaaacgcgtgtcgaactttgcgaatattgaatgcaattcgt
gaaatgaatttcgcaatgccaatctcttatctacagttgaaatcattgactttaccaaat
ttaatcaacagattgattgcccgagagcaatatccgttggcagttagttgttgtcgttgt
ttacgtttggacagtggaattggagtcaatcgagtggttatgcattgggcttcgaaaatt
gtttgtgataagtcgatcagtgatgaaagaattgtagacagaatcaaagaaaaatcaacc
gaatttccagacatatcgttcgctagtatcgccgaaattgctgctcaacacaaacgaatg
gatcttgcgacaaaaatggatattcagttgttgaattatgagaaaaatctcgaacgtcaa
gttttcatgctgatgaagttgaatcgcaacgaaaaggctctttcaaaagcagcgcagagt
aaagatccggaattaatttattctgttatacttcatttgagagaatcgtttgaaaaaatc
tccgatttgagcttgattatgcgcaattttccaataccattcaccttgtacaaatccttg
aaatgtcagataataatatttgttcgagaaataagtgcggacaattttcgatttcttttg
gaagaaaccgatgatttcatcggtcaagcgttgtatcatttgaaagcatcaaatgctcct
gttttcgatatcactgataaagttgagacgttgcagttggctgaaaaatgttttcgtatt
gcaaaagagaatttctgtgtcagccaactttgtgacaatatcaaattgctgaaattgcaa
gaagaactggcagaaaaattcaacgattcatcatcgcttgtcgattgttcactgcaagaa
acaatcgaatggctcatctgtgccaacgagtggaattatgtggaaatggcaaagaaagag
ttcaaaatttccgaccgccaattgtttttttttttgaaaatcaaatttgtctcatcaaaa
aattatcaacagattatgctggtggaagatgcgagcgcttgccaaagcatccagatggca
agatttggaaaattttgcaaaacataa
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integrated database retrieval system
