Trichinella spiralis: Tsp_05098
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Entry
Tsp_05098 CDS
T01609
Name
(RefSeq) ATP-dependent RNA helicase Ddx1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_05098
03016 Transfer RNA biogenesis [BR:
tsp03016
]
Tsp_05098
Enzymes [BR:
tsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tsp_05098
Spliceosome [BR:
tsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
Tsp_05098
Transfer RNA biogenesis [BR:
tsp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Tsp_05098
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
SPRY
Helicase_C
CMS1
AAA
Motif
Other DBs
NCBI-GeneID:
10908595
NCBI-ProteinID:
XP_003369690
LinkDB
All DBs
Position
Unknown
AA seq
773 aa
AA seq
DB search
MTAFEEMGVLSEIAKAVDEMEWVLPTDVQSEAIPAILGGGDVLMAAETGSGKTGAFCLPI
LQIVWEALKDATSGKMAKSALQHKPEAKSWILNVYDRGDAIAISPDGLLCQSRDEVKWHG
TRATKGVTGKGLTGKYYYEIQITDEGLCRVGFSTIDAALDLGTDAYGFGYGGTGKKSHLK
QFDNYGEAFGLNDVIGCFINLDDREVKFSRNGKIFPVAFSIPTKLDNSAFFPAIVLKNAE
VKFNFGSEPFKYPPSGGYIGIREASDDCTVDSKFLRGYVKVDTKPKPNAPLCIIIEPSRE
LAEQTDKQMEKNLAVVGGVGANEQIVHLKSGVEIVTGTPGRIEEFISTGQLSLSQIRFFV
LDEADGLLQQGYGRFINKLYSEMPKFTVDGKRLQIIVCSATLHNMDVKNLADKIMHFPQW
IDLKGQDSVPETVHHVVALVNPVQDLKWITSKARIKTDNIHLNDDVRPGTKSPETLSEGV
KLLKGVYILEAIKKNDISQCFIFCRTKLDCDNLEKWLTSVGKYSCVCLHSDRSPAERKNN
LQLFKFLICTDVAARGIDIRGIPFVINYTLPDDKANYLHRIGRVGRAERMGLAISLVSTV
PEKVWYHTCPSRGKSCKNTNLVENGGCAIWYNEMQLLGEIEEHLGVTITQIDIFYKVPVD
EFDGKVVYGHKKQLTASNYESHANELLTTVSELTALEKAAQISYHQLRCNPLKACMLDLR
LPLIQYVVMTMNTNRQRNGCIVSSFAKFSGVGFTPGFALRAEWRRLPFDLADR
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcatttgaagaaatgggtgtcttatctgaaattgctaaagctgtagatgaaatg
gaatgggtattacccactgacgtccagtcagaagcaatcccggcgattttagggggtggc
gatgtgcttatggctgctgaaactgggagtggtaaaacaggtgcattttgcttgccaata
ttgcaaattgtttgggaagctttgaaagatgccacaagtggaaaaatggcaaagagtgcc
ttacaacataaaccagaagctaaaagctggatattgaacgtatatgatcgaggagacgca
atagcaatatcaccggatggtcttttgtgtcaaagtcgggatgaagtgaaatggcatggt
acgcgtgcaacaaaaggcgttactggaaaaggtttgacaggaaaatattactatgaaatt
caaataactgatgaaggtttatgtcgcgttggtttttcaacaattgatgctgctctagat
ttaggaactgatgcatatggttttggttacggtggcaccggtaaaaaaagccatctaaag
caatttgacaattatggagaggcatttggcttgaatgatgttattggttgtttcattaat
ttggatgacagagaagtgaaattttctcgaaatggaaaaatattccctgttgcattctct
attccaacaaaattagataattctgctttctttcctgctattgttttgaagaatgctgaa
gtgaaatttaattttggatctgaacctttcaagtatcctccttctggcggttacattggt
atacgcgaagcttcagacgactgcaccgttgattcaaaatttctaagaggttatgtaaaa
gtggataccaaaccaaagcctaatgctcctttgtgtatcatcattgaaccatctcgtgaa
ttagcagaacaaactgacaaacaaatggagaaaaatttagctgttgttggtggagttggt
gcaaacgaacaaattgttcatttgaaatctggtgtagaaattgtcaccggaacaccaggt
cgcatagaagaatttatttcaactggacaattaagtttatcacaaatccgattttttgtt
cttgatgaagcggacggattgctgcaacaaggttatggaagatttatcaataaactttat
tcagaaatgcctaaatttacagtggatgggaaacgtttgcaaattattgtttgctctgct
acattgcataatatggatgtaaaaaatttagccgataaaattatgcatttcccacagtgg
atagatttaaaaggtcaagattctgtgcctgaaactgttcaccacgtggtagcattggtt
aatcctgtgcaggatctcaaatggattacttctaaagctcgtattaaaacagataatatt
catcttaatgatgacgtgcgtcctggaacgaaaagccctgaaacgctatccgaaggtgtg
aaacttttgaaaggtgtatacattcttgaagcaatcaaaaagaatgacataagtcagtgc
tttattttttgtcggacaaaattggattgtgataatttggaaaaatggctaacatctgtt
ggaaaatattcttgtgtctgtttgcatagtgatcgaagtcccgcggaacggaaaaataat
ttgcagttgtttaagtttcttatctgtactgatgtagctgcaagaggcattgacatacgt
ggcataccgtttgtaatcaattatacattacctgatgataaagcgaattatttgcatcgt
attggacgagttggccgtgctgaaagaatggggctagcaatttcacttgtttctacagta
ccggaaaaggtctggtatcatacttgtcctagtagaggaaagtcttgtaaaaatacaaat
ttggtcgaaaacggtggttgcgcaatttggtacaatgaaatgcagcttcttggcgaaatt
gaagaacatcttggtgttactattacgcagattgatattttctacaaagtcccggtagat
gaatttgatgggaaagttgtttacggtcataagaaacaactgactgctagcaattatgaa
agtcacgccaatgaattgcttactacggtgagtgaattaacagcgctggaaaaagcagca
caaatttcataccatcagctgcgttgcaatcctctcaaagcgtgcatgcttgacctgcgt
ttgcctctcattcagtatgtggtgatgaccatgaatacgaatagacaaagaaatggttgt
atagtttcaagttttgcaaagttttccggtgtcggctttacaccaggattcgccttacga
gcagaatggcgacgtttgccctttgacctagcagaccgttga
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