Trichinella spiralis: Tsp_05116
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Entry
Tsp_05116 CDS
T01609
Name
(RefSeq) putative liprin-beta
KO
K27096
liprin-beta
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsp04131
]
Tsp_05116
Membrane trafficking [BR:
tsp04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
Tsp_05116
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SAM_1
SAM_2
Motif
Other DBs
NCBI-GeneID:
10908613
NCBI-ProteinID:
XP_003369707
LinkDB
All DBs
Position
Unknown
AA seq
1184 aa
AA seq
DB search
MASSMTFGRRRKSRHGSSGGRATDDVAVVMQNDDEHQLPSGGQLLTSVSQQPQPQQQQQQ
QQQQQQQQQQNLLFTTPPSPKTRAANQSFYLSQIARQPMSLQCLKYDSGFGSIFSSSLST
TPFSGSATVATLNNNHNGNSNNHNNNNNNSTVNLPLPPPPPYRRISLPSARPLRIYRSYS
DSKHRSCRRFDGYHYSPCCGWSAASSRNILQFVLLGLCGGERDRGKNREEGDSSDCASPS
PSMSTVSCPEYGDLQDKLHRLESDRESLSLQVSVLAEQVGAQTEKIKDLESMLEDKKTKL
DSTEEMLHEELVTRSSLETNKLDLMAEISNLKLKMAALEREKYEREQQLKTAKSEIAQLQ
KIVRERQDELDNNAHLPSSAFDANDISRLVRKLRTRTDEVDKLRLAVQNLLTKNVEKEHQ
IEHLQKCIDLETIRNFQNRSSSRTADHFCSSVPRSLSSTRACDFYSNQEMDFNDHLRKLL
LIDSAIFPAHTGMHNDSQAKHSSSAQENFLLDDCCYRSGMTMTMMNANNNNNNSNNSCSC
EYNNNNNGHSLPNYSVNYCSPNLPNMAPVLAPSSPYLGKAVASRGGCAGGHPSTLAMAAN
HYAHAQHSGSVNHNDTCYTTARQLAAELDQLAVNFPRPTLDSIYQTGSLPRQITLGTSKK
FENGDTGELKYENSEEQQHLHLHYHHHQQQQQQQQYRWGLNCLKPLVSHRLKTNGKMYSC
SVPNLGRRKSDDEDQSSDGIELNIYNTMQSNLNCCTVTDNDDTTSIRSTARFSEQQPFKR
GRKYSSLRNFVSKIKRSTSEEIRLTNDQQSKLKQEVVASSRLGRKAFDIHGTTTMDTRAD
RLAFLKPPMSAFCKWDADQLSEWLCELGLSCYITDCRRSIQSGRHLINMSDVEVEKILGM
KNPLHRKRLKIALSAIESAGTVVKAAERMDFHQTLRWLDDIGLPQYRESFANYRIDGIML
DELTVDDLLHMHITSALHHASIRRGIQMLRMSGYSLNRLNRKFDPHVVTRGSCASSVQFW
TQHCISEWLRSSDLTEFTPNLMCSGIHGALMVLDPTFTAESLAAVLQIPQQKTLLRRHLA
TQFTNLIGADLVAAKRQFLAQSEMPILSPLLKVKLQKKSGFSLTKKKGKHEIFYEPGELV
CPIAKASLSSLLQFDQQDKLKKPSARNRPTVSEKLLDKLTSTNV
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgagtatgacttttggacgtcgtagaaaatccaggcatggttcaagtggtgga
agagcgacggatgatgtagctgttgtaatgcagaacgatgatgaacatcagctgccatct
ggtggccaattgttgacctcagtatcccaacaaccacaaccacaacagcagcagcaacag
caacagcagcaacaacaacaacaacagcaaaatttgcttttcaccacgccaccatctcca
aaaacgagagccgcgaatcagtcgttttatttgagccaaattgctaggcagccaatgtcg
ttgcaatgtttgaaatatgacagcggttttggtagcatattttcttcatcactgagcacc
actccattttctggtagtgctacagtggccacgttgaacaacaatcacaacggcaatagc
aataaccacaataacaacaacaacaacagtacggtaaatttgccattacctcctccacct
ccgtacaggagaattagcctaccgtcggccagacctttgcgaatttatcgcagctattcc
gattctaagcaccgcagctgtcgtcgttttgacggctatcattattcaccttgctgcggt
tggtcagcagccagcagtcgaaatattttacaatttgttcttttggggttgtgcggtggc
gaacgggacaggggtaagaatagggaggagggggattcaagtgattgcgcgagtcccagt
ccaagcatgagtacagtttcttgtcctgaatatggtgatttacaagacaagcttcatcgt
ctagaatctgaccgagaaagtttatcattacaagtttccgttcttgcagaacaagtgggt
gcacagacggaaaaaataaaagatcttgaatcaatgcttgaagacaagaagacaaaattg
gattcaactgaagagatgctacatgaggaactggtgaccagaagctcattggagaccaat
aagcttgacttgatggccgaaatttccaatttgaaattgaaaatggccgcccttgagcgg
gaaaaatacgaaagagagcaacaactgaaaacggcgaaaagtgaaattgctcaactgcaa
aaaattgttcgcgaacgtcaggatgaacttgacaacaatgctcatctaccttcctctgca
ttcgatgcgaacgatatcagtcgacttgtacgaaaactacggacacgaaccgatgaagtg
gacaagcttcgtttagcggtgcagaatttattgaccaagaatgtcgaaaaggaacatcaa
attgaacatttgcagaagtgcatcgatttggaaacgattcgaaattttcaaaatcgatct
tcttccagaacggcagatcatttttgttcttctgtacctcggtcgttatcgtcaacaaga
gcttgtgatttttattccaatcaagagatggatttcaacgatcatttgcgcaaactgctt
ttgatagattcagctatttttcctgcacacacaggcatgcataacgattctcaagcgaag
cattcttcttctgctcaagagaattttttgttagatgattgttgttacagaagcggtatg
acaatgacaatgatgaacgcgaataataataataataacagtaataacagttgttcatgt
gaatataataataataataatggacattctctgccgaattattcagttaattattgttct
cccaatttgcccaatatggcaccggtgttggcaccgagttcaccgtatttgggcaaagca
gttgcttcgagaggaggttgtgctggtggtcatccgtccactttggcaatggcagcaaat
cattatgcgcacgcgcagcattctggcagtgttaatcacaacgacacttgttatacaacg
gctaggcagttggcggcggagttggatcaactggcggtgaattttccgagacctacgttg
gattccatttaccaaactggcagtttgcctagacagataactctgggtacgtcgaagaaa
ttcgaaaacggcgatacgggtgagttgaagtatgagaacagtgaggaacagcaacacctt
cacctacactaccaccaccaccaacaacaacaacagcaacaacagtatcgctggggttta
aactgtttaaaaccgttggtatcgcatcgattgaaaacgaacgggaaaatgtatagttgt
tcagtgccaaatttaggacggagaaaatcagacgatgaagatcaatcaagtgatggaatt
gaattaaacatatacaatacaatgcagagcaatctgaattgctgtacagtgacggataac
gatgatactaccagtatccgttcgactgcacgcttcagtgaacaacagccgttcaaacgg
ggtagaaagtacagctcgttgagaaattttgtctccaaaataaagcgaagcacttctgaa
gaaatacgactcaccaacgatcagcagagtaaattgaagcaagaagttgttgcgtcatca
cggctaggaaggaaagcattcgacatccacggcacgacgacaatggacactagagccgat
cggttggcatttctcaaaccaccgatgagtgcgttttgcaagtgggatgcggatcagttg
agcgaatggttgtgcgaattgggcctctcttgttacatcactgattgtcgacgcagtatt
caatcagggagacatttgatcaacatgagcgacgttgaagtggaaaagatacttggaatg
aaaaatcctttgcatcggaaaaggcttaaaattgccctgtcggctattgaatctgctggc
actgttgtcaaagctgctgaacgtatggattttcatcaaacactgcgatggttggacgac
attggtttgcctcagtatcgcgaatcgttcgccaattatcgcattgatggcataatgctc
gacgaactgacggtcgatgatctcttgcacatgcacatcacgtcggctctgcatcacgcg
tccattcgtcgcggtatacagatgctgcgaatgagcggttacagtcttaatcgtttgaat
cgtaaattcgatccacatgtggttacacgaggatcgtgcgctagttctgtccaattttgg
acgcagcattgtatcagtgaatggttgcgaagcagtgatttgacggaattcactccgaat
cttatgtgttcaggcatacacggtgcgctgatggttctcgatccaacatttacagccgaa
tcgttggctgcggtattgcaaataccgcaacagaagacgttgcttcgtcgtcatcttgct
actcagtttacaaatttaatcggtgccgatttggttgcagccaaaagacaatttttagct
caatcagaaatgcctatcctatcgccgctgttgaaagtgaaactacagaagaagagtgga
ttttctctgaccaaaaagaaaggcaaacacgaaatattttacgaacccggagaattggtt
tgtccaatagcgaaggcgtctttgtcgtcgttgttgcaatttgatcagcaagataaattg
aagaaaccttctgccagaaatcgtcctactgtatctgaaaagttgctcgacaagttgaca
tcaacgaacgtctga
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integrated database retrieval system
