Trichinella spiralis: Tsp_05173
Help
Entry
Tsp_05173 CDS
T01609
Name
(RefSeq) cleavage stimulation factor
KO
K14407
cleavage stimulation factor subunit 2
Organism
tsp
Trichinella spiralis
Pathway
tsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Tsp_05173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_05173
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
Tsp_05173
U7-dependent histone pre-mRNA processing factors
Tsp_05173
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
DUF447_N
Motif
Other DBs
NCBI-GeneID:
10908913
NCBI-ProteinID:
XP_003369763
UniProt:
E5SX85
LinkDB
All DBs
Position
Unknown
AA seq
409 aa
AA seq
DB search
MSIKNDLRNTELKSSTCVYVGNLSYDASEEELKSLFSKVGPVVGFRLVCDHKTGKPSGYG
FCEFLDRETALSAERSLNKFEYRGRHLHVDATVDSIHDQKRIEASNMTKDVKRNTEMVAD
VANDPKAIAHTVANLSPNEMFELLQQMKNCHAMDEDETRRMLTQNTLLTLAIVHVLISGN
LINAEFLVNFFNRILGDSHKIKSVEAATSFQDISSHTVLGDSNMFVKTAARADQNFPAES
SGVDFMAHTSLPVPTNTVATVTTAELAVTTATLAQFSSSTKNIHETKAYYRPRFSTMKTP
VIPGLSLSNEETLPSLSASASENAKATVSATNHTTSPYSSKPPDSRSFTERSVSSHQTHS
TGIYTDDPDKNALLMQVLQLTEEQISVLPFEERQQILILKAQIQSKQFL
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatcaaaaatgatttaagaaatacagaattgaagtcgtcaacatgtgtatacgtt
ggaaatctgagctatgatgcatcggaagaagagttaaagagcttgttttctaaagttggc
cctgttgttggtttcaggcttgtgtgtgaccacaaaacgggaaagccgagtggatatggt
ttttgtgaatttttggatcgcgaaacagcgttgagtgcggaaagaagtcttaataagttt
gaatatagaggacgacatttgcatgttgatgctacagttgacagtatacatgaccagaaa
agaattgaagcatcgaatatgacgaaagacgtgaagagaaataccgaaatggtggctgat
gttgcgaatgatccaaaagcgattgcgcacactgtcgcaaatctttcaccaaacgaaatg
tttgaattgcttcaacagatgaaaaattgtcatgcaatggatgaggatgaaacaaggaga
atgttgactcagaatacgttgttgactctcgctattgtacacgtactgatcagtggcaat
ttgattaatgctgaatttttggttaatttttttaatcggattcttggcgattcacataaa
attaaatcggtggaagctgcaacttctttccaagatatttcttcccatacggtattgggt
gattcgaatatgttcgtaaaaacggctgctagagctgatcagaattttcctgcggagagc
agtggagttgatttcatggctcacacttctttgcctgttcctacgaatactgttgctact
gttaccactgctgagcttgctgttacaacagccactcttgcccaattttcatcttcgaca
aaaaatatccatgagacaaaagcatactatcgacctcgtttcagtacaatgaaaacccct
gtaattcctggtctttctttgagtaatgaagaaacattgccatcgctttcagcatctgca
tccgaaaatgcaaaagcaactgtctcagcgacgaatcacacaacttcaccttattcatcc
aaacctcctgatagcagaagctttacagaaagaagtgtttcttcacatcagacacattct
accggtatatatactgacgatcctgataagaatgcattattgatgcaagtactacagtta
actgaagagcaaatttcagttttgccttttgaagaaaggcaacaaattttaatactgaaa
gcacaaattcaaagcaagcaatttttgtga
DBGET
integrated database retrieval system
