KEGG   Trichinella spiralis: Tsp_05180
Entry
Tsp_05180         CDS       T01609                                 
Name
(RefSeq) histone-binding protein RBBP4
  KO
K10752  histone-binding protein RBBP4
Organism
tsp  Trichinella spiralis
Pathway
tsp03082  ATP-dependent chromatin remodeling
tsp03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    Tsp_05180
   03083 Polycomb repressive complex
    Tsp_05180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tsp03036]
    Tsp_05180
Chromosome and associated proteins [BR:tsp03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     Tsp_05180
  Histone modification proteins
   HAT complexes
    HATB complex
     Tsp_05180
   HDAC complexes
    Sin3A-HDAC complex
     Tsp_05180
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     Tsp_05180
    PRC2.2
     Tsp_05180
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     Tsp_05180
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    Tsp_05180
  Chromatin remodeling factors
   NuRD complex
    Tsp_05180
   NuRF complex
    Tsp_05180
   NuRF complex (fruit fly)
    Tsp_05180
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 CAF1C_H4-bd WD40_Prp19 Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_WDHD1_1st EIF3I WDR55 Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD_LRWD1 WD40_RFWD3 Beta-prop_WDR19_1st ANAPC4_WD40 eIF2A Beta-prop_DCAF12 Beta-prop_SPT8 Beta-prop_RIG_1st Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_SCAP MIOS_WD40 Beta-prop_WDR35_TULP_N Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 10908920
NCBI-ProteinID: XP_003369770
LinkDB
Position
Unknown
AA seq 478 aa
MKFFKLVSCDKQKEPYNKHFYLLCAFFLVKPKKSETWFECDFLGVRLRRKLQQIMAELIP
EEKIIGEDYKVWKRNTPFLYDLLISHALEWPSLTVQWLPNAENTADGEFKVHRMILGTHT
SDEQNHLLIAAVKLPARDATYEELASGNQKAEFGTFSSIVGKFDVEMRINHAGEVNRARF
MPQNQSVIATKTPSAEVFVFDTTKHPLKPDGTECRPQLRLRGHQKEGYGLSWNPNRSGYL
LSASDDHTVCLWDVNAPPTDRNYLQAMNTFRGHSTVVEDVAWHLMRDTLFGSVGDDQKLL
IWDVRANGGQRPAHVVDAHSAEVNCLSFNPFSEYILATGSADKTVALWDLRNAKLKLHSF
ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQTVEDAADGPPELMFVHRGH
TAKISDFAWNPETPWVVCSVSEDNIMQIWQMAENIYNEEVPPQCFLFIDTADDDEYMN
NT seq 1437 nt   +upstreamnt  +downstreamnt
atgaaattcttcaaacttgtctcatgtgataaacaaaaagaaccatacaacaaacatttt
tatttattgtgcgcattttttttggtgaaaccaaagaaaagtgaaacttggtttgaatgc
gactttcttggtgttcgtcttcgacggaaattgcaacagatcatggctgaattgattcca
gaagaaaaaatcattggtgaagattacaaagtgtggaaaagaaatacaccgtttttgtac
gatttgttgattagtcatgctcttgaatggccaagtttgactgtgcagtggcttccgaat
gctgaaaacaccgcagatggagaattcaaagttcatcgaatgattttgggaacgcataca
tcagatgagcaaaatcatttgttaatagcggcagtgaaacttccagctcgagatgctaca
tatgaagaattagcaagtggaaatcagaaagcagaattcggtacattcagttcaattgtg
gggaagtttgatgtggaaatgcgcataaatcacgctggggaagttaatcgagctcgtttt
atgcctcaaaatcagtcagttattgctactaaaactccaagtgcagaagtttttgtcttt
gatacaacaaaacatccactgaaacctgatggaactgaatgtcgaccgcagttgcgtttg
agaggacatcagaaagagggctacggtctttcatggaatccaaatcgaagcggttactta
ctttctgcatccgatgatcacacagtttgtttgtgggatgtcaatgcaccaccgacagac
cgcaattatctgcaggcaatgaacacgttcaggggtcactcgactgtcgttgaggatgtt
gcttggcatttgatgagagacactttatttggctctgttggcgacgatcaaaaattgttg
atatgggatgtacgtgctaatggtggtcaacgaccggcgcatgtagtggatgcacattcg
gcagaggtgaattgtttgtcattcaatcctttcagtgaatacatattggctaccggttct
gccgataagacagtggctttgtgggatttacgcaatgccaagctgaagttgcactctttt
gaatcgcataaagacgaaatttttcaagttcaatggtctcctcataatgaaacaatctta
gcatcgagtggtacggatcgtcgtttgcatgtttgggatttgagcaaaattggagaagag
cagactgttgaagatgctgccgacggacctcccgaattaatgtttgtgcatcgcggtcat
actgctaaaatatccgactttgcttggaatccagagacaccttgggttgtatgctcagtt
tcggaagataacatcatgcaaatttggcagatggctgaaaacatttacaatgaggaagtg
ccaccacaatgtttcctgttcatcgatacagctgatgatgatgaatatatgaattaa

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