Trichinella spiralis: Tsp_05449
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Entry
Tsp_05449 CDS
T01609
Name
(RefSeq) putative nucleoporin Seh1
KO
K14299
nucleoporin SEH1
Organism
tsp
Trichinella spiralis
Pathway
tsp03013
Nucleocytoplasmic transport
tsp04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
Tsp_05449
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
Tsp_05449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_05449
04131 Membrane trafficking [BR:
tsp04131
]
Tsp_05449
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
Tsp_05449
Membrane trafficking [BR:
tsp04131
]
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
Tsp_05449
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_EML_2
WD40
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40_Prp19
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR3_2nd
WDR55
Beta-prop_CAF1B_HIR1
Motif
Other DBs
NCBI-GeneID:
10913260
NCBI-ProteinID:
XP_003371795
UniProt:
E5SSH1
LinkDB
All DBs
Position
Unknown
AA seq
356 aa
AA seq
DB search
MRNIPIEFNDHSDMIHDVAYNYFGNRFASASSDQTVKVYELAEDGSWAFIADLKAQCGPV
FRLDWAHPDFGEILATCCLGGAIVVWEETASKDDKNPQLTEWVKRTTISHERTKLCDAKF
APSHMGLIIGAAYRDAHIRIYELPRSMKLSDWTLRYEIETPSSNLSCISWNQSLAYGSLI
AVGSDTQKSNEPKVFIFQYNETESLWNMLEFPCVTMEPVRDLKFAPSCGRSFELLAVACT
TVQIYHLTSELPDDEDKKLCKWNVKLEAELEKAPNHTYWRLDWNIIGLELAAVDGAAVLS
MWMRTTTGEWELFKRADPNCPDARRLPGIEEDRENGNSRPASPGDTTQNDFEQSFN
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaacatacctatcgaattcaatgatcattctgatatgattcatgatgtagcttat
aactattttggaaatcgatttgcatccgcttccagcgaccagacagtgaaggtttatgaa
ttggcagaagatggcagctgggcattcattgcagatttgaaagcgcagtgcggaccggta
tttcgattggactgggcgcatccagattttggtgaaatccttgctacatgttgccttggc
ggtgccatcgttgtgtgggaagagacagcgagcaaggatgataaaaatccacaattaact
gaatgggtaaaacggactacaatatcacacgagagaacgaaactttgtgatgcaaaattt
gcaccatctcacatgggcctaataattggcgcggcatatagggacgctcacattcgtatt
tatgaattgccacgcagtatgaaattatccgactggacattgcgttatgaaatcgaaacg
ccgtcttcaaatttaagttgcatttcttggaaccaatcgcttgcttacggttctcttatt
gccgttggaagcgatactcaaaagagcaacgaacccaaagtattcatttttcaatacaac
gaaacggaaagcttgtggaatatgttagaatttccatgcgttacgatggaaccagtgcgc
gatttgaaatttgcaccatcctgcggacgatcatttgaacttctagcggtcgcttgcacg
accgttcaaatttaccatctcacctctgaattaccggacgatgaagataaaaaattgtgc
aagtggaatgtgaaattggaagctgaattagaaaaagcacctaatcatacatactggcgt
cttgactggaacattattggattggaattagcagcggtcgacggcgctgcagttttatcc
atgtggatgagaacaaccaccggtgaatgggaattgttcaagagggccgatccgaattgt
cccgatgctcgaagattaccaggaattgaagaagacagagaaaatggaaattctcgtcct
gcaagtccaggagatacaacacaaaatgatttcgaacaaagtttcaattaa
DBGET
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