Trichinella spiralis: Tsp_05486
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Entry
Tsp_05486 CDS
T01609
Name
(RefSeq) putative ubiquitin--protein ligase
KO
K02332
DNA polymerase gamma 1 [EC:
2.7.7.7
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Tsp_05486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsp03032
]
Tsp_05486
03029 Mitochondrial biogenesis [BR:
tsp03029
]
Tsp_05486
Enzymes [BR:
tsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Tsp_05486
DNA replication proteins [BR:
tsp03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase gamma complex (mitochondrial)
Tsp_05486
Mitochondrial biogenesis [BR:
tsp03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Mitochondrial DNA polymerase
Tsp_05486
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNApol_Exo
UQ_con
DNA_pol_A
Pus10_C
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-GeneID:
10913279
NCBI-ProteinID:
XP_003371814
UniProt:
E5SSK9
LinkDB
All DBs
Position
Unknown
AA seq
1284 aa
AA seq
DB search
MTCRLFKHACGVGMFALLKRSLKYSCQCNSRNPLGIDMIPEKWNHILFPNSPETSVDKEQ
LENCVRRILSTLGSSAESDLKTNLLGKSNDSCTEGNISDIPSRFDSIADVVAEKFPPLEG
SNLDEHFKIIAHRYGDTYKKLLDKFSKFPLPPINQTWVFRPGWTKYSFQGDHPIAVDYPD
DNALILDVEVCVNAGNHPTIAVALSDTAWYSWCSKRLFNPRYHYTNKVDLDDLIPLGRKA
DDPERIIIGHNVGFDRTFVKEEYFLKSSRLRFWDTMSMHIAVCGLAGDQRVLFMAARKGN
RTKASEEALVHTENPTKESNVLGFQNWKWLDVTSTNSLIEVHRFHCPNSGLFVAKELRDL
FLVGTMSDIREKFQLLMTYCATDVAATFEVFSMLMDQFWQRYANYHKNSPAFLFIRISTP
SHFCWYVGNGHFVFAYQCEMATLHDCLGQNAANISKSSRSIVARKGPSGMQFTLQRSVCI
TIIIIFYLFYLFFSFIRYKDDPWLWNENWDVGKEPKRITTFKRKTTETALEYAKRVWDES
MKKQNKKSMNRRLPAWYRSLLQNNMQLERWDEVDVFNAILEISSNENAINLSAQMRLAFK
LLRVHWNGYPLYFSDAYGWGYLVPGRTSNLSQFQEEQPGRYIVEENVVFPYKSVEAFVML
RRGKIDQPNGDLQSDDPDNLRLITAFNSMCSYWKNNRDRIVPQMVVSLTRFQDACKITPD
DEISVILPRVVCVGTVTRRSVEPTWMTVSNPEVFFLLISILQLYFIYAVLQPDRIGSELR
GLIIAPKGYCFVGADVDSQELWIAALFSDSYGVKIHGSTPISWILLKGDKSKGTDQHSLT
AKEMGVSRSQAKILNYGRIYGAGRPFATRLLKTFLPTLSDEDVKKMARKLYRKTKGSAVY
LRELTEKGRTAVKLLKKEHNVDIMLYDGEFIKESDIGELLSESDLFNALEKIARSPQPRT
PILGCRISRALEPDVVNEDSVAFFSKIDIDHVLRKEVDVDCTTPSNPFGLTACYNIPFEF
SVQHRVRNFTYVRAYSKLSEHFLFTLFYENLCSFSALIVQIYVPAAEYNNLTSFHVDLLI
IRYDYKHLISVKLCIYEKQIFTLIYAHSYCNEGRIFSRHCSARMSSESLQKLMENHRSWK
ENHPAGFSANPILLDENKYDFYNWVCHIPGAKESSWEGGLYRLIMFFPENYPNTPPRCTF
VPPLFHPNIHASGVVQWSFLDCSKQWVPSMKIGDILVGLQQLLAEPCLDEVVHNEAYTVL
CTDPNAYDFIIQQLAKKFKPVTKT
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgacgtgtcggttgttcaagcatgcttgcggggtcggcatgtttgctcttctgaagaga
agtttgaaatattcttgccaatgcaacagccgaaatccactcggcatcgatatgatacct
gaaaaatggaatcatattctttttccaaattctcctgaaacgtcagttgacaaagagcag
ttggaaaattgtgttcgaagaattttatccacgttgggatcgagcgcggaaagtgatttg
aaaacgaatttacttggtaaaagcaacgattcttgtaccgagggaaacatttctgatatt
ccaagtcgatttgattccattgccgacgttgtggcggaaaagtttccacccttggaagga
tcgaatttggatgagcatttcaaaattattgctcatagatatggtgacacttataaaaag
cttttggataaatttagcaaatttccattgccacctataaatcaaacttgggttttccga
ccgggatggaccaagtacagctttcaaggcgaccatccgatagccgtcgattatcctgat
gataacgcgttaattctggacgttgaagtttgcgtcaatgcggggaatcatccgacaatt
gctgttgcactttccgacactgcttggtattcatggtgtagcaaaagattgttcaatcct
cgttaccattacacgaacaaggttgatcttgacgatttaattcctttaggaaggaaagca
gatgatcctgaacgcataattattgggcataatgttggctttgatcgaacttttgtgaaa
gaagaatattttttaaaatcatctcgactgagattttgggatacaatgtcgatgcatatt
gccgtttgtggtcttgccggtgatcaacgtgtactattcatggctgcaaggaagggaaac
cggaccaaagcgtctgaagaagcattagtgcatactgagaatcctaccaaagagagcaac
gttcttggattccaaaattggaagtggttggatgtgacaagtacgaactcgttgattgaa
gtacatcgctttcattgtcccaacagtggactgtttgttgccaaagaattgcgtgacttg
ttcttggtgggtacgatgagtgatatcagggagaaattccagttgttgatgacgtactgt
gcgacagatgtggccgctacttttgaggttttctccatgctaatggatcagttctggcaa
aggtatgcaaattaccacaaaaattctcctgcattcctattcattaggatttccacaccc
agtcacttttgttggtatgttggaaatgggcacttcgtatttgcctaccaatgcgaaatg
gcaacactacatgactgcctcggacaaaacgcagcgaacatttcaaaatcaagtcggagc
attgttgcaagaaaaggcccgtcaggcatgcaatttactttacaacgatcggtctgtatt
accattattatcattttttatttattctatttgttcttttcttttattagatataaagat
gatccttggctgtggaacgaaaactgggatgttggcaaggagccaaaacgaataacgact
tttaaacggaaaactaccgagacagctttggaatatgccaagagagtttgggatgaatcg
atgaagaaacaaaacaagaaaagcatgaaccgtcgattgccagcatggtatcgaagtttg
ttgcaaaacaacatgcaactggaacgatgggacgaagtggacgtgttcaacgctattctt
gaaattagcagcaatgaaaatgcaatcaatttaagcgcacaaatgcgactcgctttcaaa
ctattgcgagtccattggaatggatatccgctttacttttccgatgcatacggatggggt
tatcttgtacccggtcgcacatccaatttgagtcagtttcaagaagaacaacctggtcga
tatattgttgaggaaaatgttgtctttccgtataaatctgtcgaagcatttgtgatgttg
agacgtggaaaaatcgatcaacctaatggggatttgcagtcggatgaccctgataattta
cggcttataaccgctttcaattcaatgtgttcttattggaagaacaacagagatcgtata
gtaccccagatggttgtttcgctgactcgttttcaagatgcatgcaaaataacacctgat
gatgaaatatcagtaatacttcctcgtgtggtgtgcgtcggaacagtgactcgtcgttca
gtcgaaccaacctggatgaccgtatcaaatcctgaagtatttttcttgcttatttcaatt
ttgcaattatattttatttatgctgttcttcagccggatcgtattggaagcgaattgaga
ggattgattatagctccaaaaggatattgttttgttggcgctgatgtagattcacaggaa
ctttggattgcggcactttttagcgatagctacggtgttaaaattcacggttccacaccg
ataagttggattttactaaaaggcgataaaagtaaaggcaccgatcagcacagtttaact
gcgaaagaaatgggcgtcagtagaagtcaagcaaagatattaaattatggtcgaatttac
ggtgccggcagaccgtttgcaactagactactgaagacgtttttgccaacattatcagat
gaagatgttaaaaaaatggctcgaaaattgtaccgcaaaacgaaaggcagtgctgtgtat
ttgcgggaactgacagagaaaggtcgaacggcggtaaagctgctgaaaaaggaacacaac
gttgatataatgttgtatgatggagaatttatcaaagagtctgatattggtgaactgttg
agtgaatcagacttgttcaatgctttggaaaagattgctcgatccccgcagcccagaacg
ccaatactaggatgtcgaataagcagagcactggaacctgacgttgtaaatgaggattcg
gttgcattcttctctaaaattgacattgatcatgtgctgcgcaaggaagttgacgtcgat
tgcacaactccgtcgaatccgtttggtttgactgcttgttacaatataccatttgaattt
tctgttcaacatcgagttcgtaactttacatatgttagggcttattcaaaattgtcagaa
catttccttttcaccttattttatgaaaacctatgctctttttctgcattgatagtgcaa
atttacgtacctgcagctgaatataacaacttaacaagttttcacgttgacctgctaatc
attagatatgattacaagcatttaatcagtgttaagctttgtatttatgaaaaacaaata
ttcaccttgatttatgctcattcttactgtaatgaaggacgcattttctcaaggcattgt
agcgcaagaatgtcatcagaaagtttacaaaaattgatggagaatcatcgtagttggaag
gaaaatcatccagcaggattttccgccaaccccatacttttggatgaaaataaatatgac
ttttacaattgggtgtgtcacatacctggagcaaaagaatcttcatgggaaggtggcttg
tacagattaattatgtttttccctgaaaattatccaaacacgcctcctcgttgtacattt
gtaccaccgctttttcatccaaatattcatgcttcaggtgttgttcagtggtcatttcta
gactgttcaaagcaatgggtaccgtcaatgaaaataggcgacatcctggttggactacaa
caacttctagctgaaccatgcttagatgaagttgtgcacaatgaagcatatacagtattg
tgcactgatccaaatgcatacgattttataattcagcagctggcaaagaaatttaagcct
gttacaaaaacatga
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integrated database retrieval system
